Hb_001353_020

Information

Type -
Description -
Location Contig1353: 71804-72798
Sequence    

Annotation

kegg
ID rcu:RCOM_1375760
description hypothetical protein
nr
ID XP_002523770.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FMY4
description Uncharacterized protein At5g23160 OS=Arabidopsis thaliana GN=At5g23160 PE=2 SV=1
trembl
ID B9SCQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1375760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001353_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000096_110 0.1359927651 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
3 Hb_003929_230 0.1458138357 - - PREDICTED: S-adenosylmethionine synthase 5 [Nelumbo nucifera]
4 Hb_007894_070 0.1472586375 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
5 Hb_002000_090 0.1485769898 - - 60S ribosomal protein L3B [Hevea brasiliensis]
6 Hb_008066_080 0.1515471864 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
7 Hb_006414_010 0.1542090394 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
8 Hb_002284_080 0.1559367848 - - protein with unknown function [Ricinus communis]
9 Hb_000254_010 0.1573758828 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
10 Hb_001179_010 0.1576524646 - - PREDICTED: glycosyltransferase family protein 64 protein C5 [Jatropha curcas]
11 Hb_073808_010 0.1578917969 desease resistance Gene Name: DUF594 ATP binding protein, putative [Ricinus communis]
12 Hb_001754_120 0.1581085669 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
13 Hb_000340_220 0.1591336995 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001318_100 0.159496454 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
15 Hb_031385_010 0.1608883589 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
16 Hb_012760_090 0.1611161556 - - Aspartic proteinase-like protein 1 [Morus notabilis]
17 Hb_001486_100 0.1622961572 - - tubulin alpha chain, putative [Ricinus communis]
18 Hb_002740_100 0.1633042412 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
19 Hb_004522_030 0.1658550061 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
20 Hb_002316_020 0.1673089587 - - PREDICTED: uncharacterized protein LOC105640407 [Jatropha curcas]

Gene co-expression network

sample Hb_001353_020 Hb_001353_020 Hb_000096_110 Hb_000096_110 Hb_001353_020--Hb_000096_110 Hb_003929_230 Hb_003929_230 Hb_001353_020--Hb_003929_230 Hb_007894_070 Hb_007894_070 Hb_001353_020--Hb_007894_070 Hb_002000_090 Hb_002000_090 Hb_001353_020--Hb_002000_090 Hb_008066_080 Hb_008066_080 Hb_001353_020--Hb_008066_080 Hb_006414_010 Hb_006414_010 Hb_001353_020--Hb_006414_010 Hb_001195_230 Hb_001195_230 Hb_000096_110--Hb_001195_230 Hb_000320_450 Hb_000320_450 Hb_000096_110--Hb_000320_450 Hb_002838_010 Hb_002838_010 Hb_000096_110--Hb_002838_010 Hb_001179_010 Hb_001179_010 Hb_000096_110--Hb_001179_010 Hb_002316_020 Hb_002316_020 Hb_000096_110--Hb_002316_020 Hb_000007_440 Hb_000007_440 Hb_000096_110--Hb_000007_440 Hb_003001_130 Hb_003001_130 Hb_003929_230--Hb_003001_130 Hb_001318_100 Hb_001318_100 Hb_003929_230--Hb_001318_100 Hb_005408_100 Hb_005408_100 Hb_003929_230--Hb_005408_100 Hb_000349_200 Hb_000349_200 Hb_003929_230--Hb_000349_200 Hb_000109_190 Hb_000109_190 Hb_003929_230--Hb_000109_190 Hb_000603_020 Hb_000603_020 Hb_003929_230--Hb_000603_020 Hb_007894_070--Hb_006414_010 Hb_000210_040 Hb_000210_040 Hb_007894_070--Hb_000210_040 Hb_000227_280 Hb_000227_280 Hb_007894_070--Hb_000227_280 Hb_000659_040 Hb_000659_040 Hb_007894_070--Hb_000659_040 Hb_004241_110 Hb_004241_110 Hb_007894_070--Hb_004241_110 Hb_007894_070--Hb_001318_100 Hb_002284_080 Hb_002284_080 Hb_002000_090--Hb_002284_080 Hb_012760_090 Hb_012760_090 Hb_002000_090--Hb_012760_090 Hb_002119_040 Hb_002119_040 Hb_002000_090--Hb_002119_040 Hb_034507_090 Hb_034507_090 Hb_002000_090--Hb_034507_090 Hb_000735_140 Hb_000735_140 Hb_002000_090--Hb_000735_140 Hb_001189_100 Hb_001189_100 Hb_008066_080--Hb_001189_100 Hb_001439_010 Hb_001439_010 Hb_008066_080--Hb_001439_010 Hb_000692_110 Hb_000692_110 Hb_008066_080--Hb_000692_110 Hb_003879_020 Hb_003879_020 Hb_008066_080--Hb_003879_020 Hb_006469_090 Hb_006469_090 Hb_008066_080--Hb_006469_090 Hb_003607_140 Hb_003607_140 Hb_008066_080--Hb_003607_140 Hb_001486_100 Hb_001486_100 Hb_006414_010--Hb_001486_100 Hb_000800_010 Hb_000800_010 Hb_006414_010--Hb_000800_010 Hb_006414_010--Hb_000210_040 Hb_002740_100 Hb_002740_100 Hb_006414_010--Hb_002740_100 Hb_006414_010--Hb_000659_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.190136 1.50928 1.81739 2.77365 0.0237502 0.0291236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.116267 0.0457168 0.584485 1.29064 1.85477

CAGE analysis