Hb_001355_060

Information

Type -
Description -
Location Contig1355: 38322-44137
Sequence    

Annotation

kegg
ID gmx:102667256
description uncharacterized LOC102667256
nr
ID XP_011075658.1
description PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
swissprot
ID -
description -
trembl
ID V4KHZ5
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10012141mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001355_060 0.0 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
2 Hb_001174_050 0.1218649503 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002973_130 0.1520091675 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
4 Hb_000061_110 0.1522405522 - - -
5 Hb_011358_010 0.1612528755 - - -
6 Hb_112791_030 0.1644187576 - - Uncharacterized protein TCM_027940 [Theobroma cacao]
7 Hb_145080_010 0.1668767096 - - PREDICTED: uncharacterized protein LOC105643750 [Jatropha curcas]
8 Hb_000685_140 0.1682609147 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
9 Hb_002447_100 0.1690105554 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]
10 Hb_003994_070 0.1694201872 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_155423_010 0.1697313713 - - -
12 Hb_000975_260 0.1717638395 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010863_070 0.1720467981 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
14 Hb_011432_010 0.1729186848 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
15 Hb_001411_100 0.1730264063 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
16 Hb_003649_030 0.1755813675 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
17 Hb_001542_010 0.1775358243 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_008834_010 0.1828153991 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
19 Hb_001452_090 0.1839041219 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
20 Hb_000289_090 0.1842912628 - - -

Gene co-expression network

sample Hb_001355_060 Hb_001355_060 Hb_001174_050 Hb_001174_050 Hb_001355_060--Hb_001174_050 Hb_002973_130 Hb_002973_130 Hb_001355_060--Hb_002973_130 Hb_000061_110 Hb_000061_110 Hb_001355_060--Hb_000061_110 Hb_011358_010 Hb_011358_010 Hb_001355_060--Hb_011358_010 Hb_112791_030 Hb_112791_030 Hb_001355_060--Hb_112791_030 Hb_145080_010 Hb_145080_010 Hb_001355_060--Hb_145080_010 Hb_159124_010 Hb_159124_010 Hb_001174_050--Hb_159124_010 Hb_005432_020 Hb_005432_020 Hb_001174_050--Hb_005432_020 Hb_101034_010 Hb_101034_010 Hb_001174_050--Hb_101034_010 Hb_181013_010 Hb_181013_010 Hb_001174_050--Hb_181013_010 Hb_000142_090 Hb_000142_090 Hb_001174_050--Hb_000142_090 Hb_011432_010 Hb_011432_010 Hb_002973_130--Hb_011432_010 Hb_037519_010 Hb_037519_010 Hb_002973_130--Hb_037519_010 Hb_002973_130--Hb_011358_010 Hb_002973_130--Hb_145080_010 Hb_002973_130--Hb_112791_030 Hb_002876_280 Hb_002876_280 Hb_002973_130--Hb_002876_280 Hb_003649_030 Hb_003649_030 Hb_000061_110--Hb_003649_030 Hb_009898_060 Hb_009898_060 Hb_000061_110--Hb_009898_060 Hb_002815_040 Hb_002815_040 Hb_000061_110--Hb_002815_040 Hb_001411_100 Hb_001411_100 Hb_000061_110--Hb_001411_100 Hb_056506_010 Hb_056506_010 Hb_000061_110--Hb_056506_010 Hb_011358_010--Hb_112791_030 Hb_011358_010--Hb_145080_010 Hb_011358_010--Hb_037519_010 Hb_011358_010--Hb_011432_010 Hb_000193_090 Hb_000193_090 Hb_011358_010--Hb_000193_090 Hb_112791_030--Hb_145080_010 Hb_112791_030--Hb_011432_010 Hb_112791_030--Hb_037519_010 Hb_007295_020 Hb_007295_020 Hb_112791_030--Hb_007295_020 Hb_145080_010--Hb_011432_010 Hb_145080_010--Hb_037519_010 Hb_145080_010--Hb_007295_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.208009 0 0.0951531 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.154347 0.597825

CAGE analysis