Hb_001355_130

Information

Type -
Description -
Location Contig1355: 100503-107368
Sequence    

Annotation

kegg
ID rcu:RCOM_0534960
description metal ion binding protein, putative
nr
ID XP_011042132.1
description PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
swissprot
ID A4FLF6
description UPF0261 protein SACE_5696 OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=SACE_5696 PE=3 SV=1
trembl
ID B9S6C0
description Metal ion binding protein, putative OS=Ricinus communis GN=RCOM_0534960 PE=4 SV=1
Gene Ontology
ID GO:0046872
description metal ion binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001355_130 0.0 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
2 Hb_094437_060 0.1720304405 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
3 Hb_002918_230 0.1760028934 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
4 Hb_183623_010 0.1974933848 - - aldo-keto reductase, putative [Ricinus communis]
5 Hb_005873_010 0.2250533584 - - cysteine desulfurylase, putative [Ricinus communis]
6 Hb_000879_190 0.2297777462 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004976_050 0.2328630223 - - -
8 Hb_001699_200 0.2400550398 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
9 Hb_138710_010 0.2424186875 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
10 Hb_001828_030 0.2448473819 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
11 Hb_158092_060 0.2489185129 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
12 Hb_006275_010 0.2497141053 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
13 Hb_004800_170 0.2511471133 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
14 Hb_000120_390 0.2584730173 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
15 Hb_000300_130 0.260364477 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105141503 [Populus euphratica]
16 Hb_000011_290 0.2608253609 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]
17 Hb_000025_430 0.2613189858 transcription factor TF Family: SRS transcription factor, putative [Ricinus communis]
18 Hb_007432_020 0.2623594501 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
19 Hb_000005_250 0.2682553693 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000805_320 0.2707670279 - - PREDICTED: putative hydrolase C777.06c [Jatropha curcas]

Gene co-expression network

sample Hb_001355_130 Hb_001355_130 Hb_094437_060 Hb_094437_060 Hb_001355_130--Hb_094437_060 Hb_002918_230 Hb_002918_230 Hb_001355_130--Hb_002918_230 Hb_183623_010 Hb_183623_010 Hb_001355_130--Hb_183623_010 Hb_005873_010 Hb_005873_010 Hb_001355_130--Hb_005873_010 Hb_000879_190 Hb_000879_190 Hb_001355_130--Hb_000879_190 Hb_004976_050 Hb_004976_050 Hb_001355_130--Hb_004976_050 Hb_000805_320 Hb_000805_320 Hb_094437_060--Hb_000805_320 Hb_138710_010 Hb_138710_010 Hb_094437_060--Hb_138710_010 Hb_094437_060--Hb_005873_010 Hb_007432_020 Hb_007432_020 Hb_094437_060--Hb_007432_020 Hb_105602_010 Hb_105602_010 Hb_094437_060--Hb_105602_010 Hb_004800_170 Hb_004800_170 Hb_002918_230--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_002918_230--Hb_003096_050 Hb_000056_330 Hb_000056_330 Hb_002918_230--Hb_000056_330 Hb_001190_060 Hb_001190_060 Hb_002918_230--Hb_001190_060 Hb_000975_150 Hb_000975_150 Hb_002918_230--Hb_000975_150 Hb_000297_020 Hb_000297_020 Hb_183623_010--Hb_000297_020 Hb_001946_030 Hb_001946_030 Hb_183623_010--Hb_001946_030 Hb_183623_010--Hb_138710_010 Hb_183623_010--Hb_094437_060 Hb_000300_130 Hb_000300_130 Hb_183623_010--Hb_000300_130 Hb_001332_040 Hb_001332_040 Hb_005873_010--Hb_001332_040 Hb_001699_200 Hb_001699_200 Hb_005873_010--Hb_001699_200 Hb_005873_010--Hb_105602_010 Hb_000614_170 Hb_000614_170 Hb_005873_010--Hb_000614_170 Hb_000621_020 Hb_000621_020 Hb_005873_010--Hb_000621_020 Hb_001623_160 Hb_001623_160 Hb_005873_010--Hb_001623_160 Hb_000165_210 Hb_000165_210 Hb_000879_190--Hb_000165_210 Hb_000061_090 Hb_000061_090 Hb_000879_190--Hb_000061_090 Hb_000414_110 Hb_000414_110 Hb_000879_190--Hb_000414_110 Hb_000879_190--Hb_004800_170 Hb_158092_060 Hb_158092_060 Hb_000879_190--Hb_158092_060 Hb_000879_190--Hb_001699_200 Hb_000011_290 Hb_000011_290 Hb_004976_050--Hb_000011_290 Hb_004976_050--Hb_138710_010 Hb_004976_050--Hb_094437_060 Hb_002849_090 Hb_002849_090 Hb_004976_050--Hb_002849_090 Hb_004976_050--Hb_000879_190 Hb_004976_050--Hb_158092_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0223212 0.0387454 0.0598266 0.161593 0.0111783 0.0108761
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.279227 0.199722 0.151037 0.938614 0

CAGE analysis