Hb_001357_020

Information

Type -
Description -
Location Contig1357: 12573-19403
Sequence    

Annotation

kegg
ID pmum:103326541
description EH domain-containing protein 1
nr
ID XP_012070903.1
description PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
swissprot
ID Q94CF0
description EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1
trembl
ID A0A067L542
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00946 PE=4 SV=1
Gene Ontology
ID GO:0005768
description eh domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09897: 12737-13160 , PASA_asmbl_09898: 13699-19065 , PASA_asmbl_09900: 13699-15072 , PASA_asmbl_09901: 17187-17385 , PASA_asmbl_09904: 20133-21454
cDNA
(Sanger)
(ID:Location)		 020_J05.ab1: 16046-19065

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_020 0.0 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
2 Hb_002600_150 0.0544271219 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
3 Hb_002518_260 0.0618731813 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
4 Hb_000388_090 0.0653312299 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_029510_050 0.0660781779 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
6 Hb_000976_300 0.0683113474 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
7 Hb_001008_120 0.0687088773 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
8 Hb_009486_140 0.0706043183 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
9 Hb_000028_480 0.0718465966 - - PREDICTED: putative 3,4-dihydroxy-2-butanone kinase [Jatropha curcas]
10 Hb_000053_040 0.0727295011 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
11 Hb_001417_030 0.0738178752 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
12 Hb_028912_050 0.0774859351 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
13 Hb_004254_090 0.0791236338 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_005686_090 0.0811123467 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X1 [Jatropha curcas]
15 Hb_000254_090 0.0816118846 - - PREDICTED: la protein 2 [Jatropha curcas]
16 Hb_001157_240 0.0816437837 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 37-like [Jatropha curcas]
17 Hb_002263_020 0.0834779436 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
18 Hb_000792_010 0.0843317811 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]
19 Hb_000922_380 0.0848156812 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
20 Hb_011386_010 0.0854166084 - - mitochondrial carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001357_020 Hb_001357_020 Hb_002600_150 Hb_002600_150 Hb_001357_020--Hb_002600_150 Hb_002518_260 Hb_002518_260 Hb_001357_020--Hb_002518_260 Hb_000388_090 Hb_000388_090 Hb_001357_020--Hb_000388_090 Hb_029510_050 Hb_029510_050 Hb_001357_020--Hb_029510_050 Hb_000976_300 Hb_000976_300 Hb_001357_020--Hb_000976_300 Hb_001008_120 Hb_001008_120 Hb_001357_020--Hb_001008_120 Hb_000053_040 Hb_000053_040 Hb_002600_150--Hb_000053_040 Hb_012733_030 Hb_012733_030 Hb_002600_150--Hb_012733_030 Hb_000138_100 Hb_000138_100 Hb_002600_150--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002600_150--Hb_013726_090 Hb_001473_180 Hb_001473_180 Hb_002600_150--Hb_001473_180 Hb_000041_110 Hb_000041_110 Hb_002518_260--Hb_000041_110 Hb_000792_010 Hb_000792_010 Hb_002518_260--Hb_000792_010 Hb_000028_480 Hb_000028_480 Hb_002518_260--Hb_000028_480 Hb_009486_140 Hb_009486_140 Hb_002518_260--Hb_009486_140 Hb_011386_010 Hb_011386_010 Hb_002518_260--Hb_011386_010 Hb_000329_710 Hb_000329_710 Hb_002518_260--Hb_000329_710 Hb_005736_020 Hb_005736_020 Hb_000388_090--Hb_005736_020 Hb_002063_020 Hb_002063_020 Hb_000388_090--Hb_002063_020 Hb_028912_050 Hb_028912_050 Hb_000388_090--Hb_028912_050 Hb_002099_080 Hb_002099_080 Hb_000388_090--Hb_002099_080 Hb_000028_390 Hb_000028_390 Hb_000388_090--Hb_000028_390 Hb_000254_090 Hb_000254_090 Hb_029510_050--Hb_000254_090 Hb_029879_070 Hb_029879_070 Hb_029510_050--Hb_029879_070 Hb_029510_050--Hb_002518_260 Hb_005686_090 Hb_005686_090 Hb_029510_050--Hb_005686_090 Hb_002685_210 Hb_002685_210 Hb_029510_050--Hb_002685_210 Hb_000976_300--Hb_000028_480 Hb_002496_010 Hb_002496_010 Hb_000976_300--Hb_002496_010 Hb_000976_300--Hb_002518_260 Hb_000977_110 Hb_000977_110 Hb_000976_300--Hb_000977_110 Hb_000976_300--Hb_002600_150 Hb_001008_120--Hb_028912_050 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_001008_120--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.20545 4.2684 3.63518 4.59586 5.17947 5.75696
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.67957 5.77948 7.58594 8.43948 8.9959

CAGE analysis