Hb_001357_030

Information

Type -
Description -
Location Contig1357: 20159-22414
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36620g
description POPTRDRAFT_844105; hypothetical protein
nr
ID KHG22956.1
description hypothetical protein F383_04880 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PHW8
description Uncharacterized protein OS=Gossypium arboreum GN=F383_04880 PE=4 SV=1
Gene Ontology
ID GO:0005739
description extracellular ligand-gated ion channel

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09902: 21205-22343 , PASA_asmbl_09903: 21161-22343 , PASA_asmbl_09904: 20133-21454
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_030 0.0 - - hypothetical protein F383_04880 [Gossypium arboreum]
2 Hb_160405_010 0.144179975 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_000302_100 0.1606248056 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
4 Hb_000733_090 0.1655987805 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
5 Hb_001016_040 0.1709350719 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
6 Hb_105660_010 0.172001865 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
7 Hb_049915_010 0.1721478029 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
8 Hb_000720_060 0.1767410171 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
9 Hb_186647_010 0.1777976669 - - -
10 Hb_001277_420 0.1846509983 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
11 Hb_155541_020 0.1851371781 - - -
12 Hb_006550_010 0.1852457655 - - PREDICTED: vacuolar amino acid transporter 1 [Eucalyptus grandis]
13 Hb_003647_040 0.1891959607 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000342_140 0.1922194435 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
15 Hb_186495_010 0.1936209303 - - Phosphoprotein phosphatase [Theobroma cacao]
16 Hb_000032_430 0.1938277904 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005016_020 0.1958028791 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
18 Hb_000103_190 0.1995828231 - - PREDICTED: sulfate transporter 3.1-like [Jatropha curcas]
19 Hb_000000_110 0.2010103856 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
20 Hb_103149_010 0.2017221319 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001357_030 Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_001357_030--Hb_160405_010 Hb_000302_100 Hb_000302_100 Hb_001357_030--Hb_000302_100 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_105660_010 Hb_105660_010 Hb_001357_030--Hb_105660_010 Hb_049915_010 Hb_049915_010 Hb_001357_030--Hb_049915_010 Hb_004449_090 Hb_004449_090 Hb_160405_010--Hb_004449_090 Hb_000032_430 Hb_000032_430 Hb_160405_010--Hb_000032_430 Hb_005016_020 Hb_005016_020 Hb_160405_010--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_160405_010--Hb_000000_110 Hb_001178_080 Hb_001178_080 Hb_160405_010--Hb_001178_080 Hb_066514_010 Hb_066514_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_000733_090--Hb_049915_010 Hb_103149_010 Hb_103149_010 Hb_000733_090--Hb_103149_010 Hb_003952_080 Hb_003952_080 Hb_000733_090--Hb_003952_080 Hb_000692_230 Hb_000692_230 Hb_000733_090--Hb_000692_230 Hb_000604_050 Hb_000604_050 Hb_000733_090--Hb_000604_050 Hb_008406_030 Hb_008406_030 Hb_000733_090--Hb_008406_030 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_001016_040--Hb_103149_010 Hb_186495_010 Hb_186495_010 Hb_001016_040--Hb_186495_010 Hb_009476_160 Hb_009476_160 Hb_001016_040--Hb_009476_160 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_000732_100 Hb_000732_100 Hb_001016_040--Hb_000732_100 Hb_020967_010 Hb_020967_010 Hb_105660_010--Hb_020967_010 Hb_004453_180 Hb_004453_180 Hb_105660_010--Hb_004453_180 Hb_186647_010 Hb_186647_010 Hb_105660_010--Hb_186647_010 Hb_000172_050 Hb_000172_050 Hb_105660_010--Hb_000172_050 Hb_006550_010 Hb_006550_010 Hb_105660_010--Hb_006550_010 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_000172_230 Hb_000172_230 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.681972 9.34889 1.92069 19.4502 1.05153 1.80451
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.234086 0.491041 0.800601 4.41096 1.01806

CAGE analysis