Hb_001357_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig1357: 30869-31579
Sequence    

Annotation

kegg
ID rcu:RCOM_0546450
description Ethylene-responsive transcription factor, putative
nr
ID NP_001295747.1
description ethylene-responsive transcription factor 3-like [Jatropha curcas]
swissprot
ID Q9LDE4
description Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1
trembl
ID A0A068BGH5
description C-repeat binding transcription factor 2 OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09905: 30578-31888
cDNA
(Sanger)
(ID:Location)		 041_F14.ab1: 31055-31732 , 051_J22.ab1: 31186-31888

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_040 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
2 Hb_003617_020 0.0754315317 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
3 Hb_004725_050 0.0915453384 - - Rhomboid protein, putative [Ricinus communis]
4 Hb_001377_270 0.0923764684 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
5 Hb_001674_030 0.0971020778 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
6 Hb_000080_150 0.097847832 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
7 Hb_000931_020 0.0979746093 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
8 Hb_003078_020 0.0987040128 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
9 Hb_000213_010 0.1013388871 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
10 Hb_000009_400 0.1022980878 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
11 Hb_007850_090 0.1028669434 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
12 Hb_001766_080 0.103157715 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
13 Hb_003747_190 0.1032058507 - - PREDICTED: uncharacterized protein LOC103966622 [Pyrus x bretschneideri]
14 Hb_000322_070 0.1033744064 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
15 Hb_000072_120 0.1055730116 - - serine/threonine protein kinase, putative [Ricinus communis]
16 Hb_135831_010 0.1065304548 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
17 Hb_003640_040 0.1069941978 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
18 Hb_000260_600 0.1085998901 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000048_060 0.1092182928 - - PREDICTED: probable apyrase 7 isoform X1 [Jatropha curcas]
20 Hb_000329_230 0.1100695336 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_040 Hb_001357_040 Hb_003617_020 Hb_003617_020 Hb_001357_040--Hb_003617_020 Hb_004725_050 Hb_004725_050 Hb_001357_040--Hb_004725_050 Hb_001377_270 Hb_001377_270 Hb_001357_040--Hb_001377_270 Hb_001674_030 Hb_001674_030 Hb_001357_040--Hb_001674_030 Hb_000080_150 Hb_000080_150 Hb_001357_040--Hb_000080_150 Hb_000931_020 Hb_000931_020 Hb_001357_040--Hb_000931_020 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_000291_150 Hb_000291_150 Hb_004725_050--Hb_000291_150 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_001377_270--Hb_000080_150 Hb_005269_040 Hb_005269_040 Hb_001377_270--Hb_005269_040 Hb_001538_130 Hb_001538_130 Hb_001377_270--Hb_001538_130 Hb_000347_180 Hb_000347_180 Hb_001377_270--Hb_000347_180 Hb_000608_320 Hb_000608_320 Hb_001377_270--Hb_000608_320 Hb_000366_120 Hb_000366_120 Hb_001377_270--Hb_000366_120 Hb_007850_090 Hb_007850_090 Hb_001674_030--Hb_007850_090 Hb_001674_030--Hb_000072_120 Hb_001674_030--Hb_000329_230 Hb_003906_200 Hb_003906_200 Hb_001674_030--Hb_003906_200 Hb_000009_500 Hb_000009_500 Hb_001674_030--Hb_000009_500 Hb_000402_230 Hb_000402_230 Hb_001674_030--Hb_000402_230 Hb_000080_150--Hb_000366_120 Hb_002111_070 Hb_002111_070 Hb_000080_150--Hb_002111_070 Hb_003640_040 Hb_003640_040 Hb_000080_150--Hb_003640_040 Hb_004195_200 Hb_004195_200 Hb_000080_150--Hb_004195_200 Hb_001248_060 Hb_001248_060 Hb_000080_150--Hb_001248_060 Hb_000622_340 Hb_000622_340 Hb_000931_020--Hb_000622_340 Hb_003078_020 Hb_003078_020 Hb_000931_020--Hb_003078_020 Hb_008937_010 Hb_008937_010 Hb_000931_020--Hb_008937_010 Hb_000991_040 Hb_000991_040 Hb_000931_020--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_000931_020--Hb_000260_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
57.1943 96.022 39.462 126.183 82.5489 65.4026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.7708 43.3833 85.5571 45.0229 42.6746

CAGE analysis