Hb_001357_080

Information

Type -
Description -
Location Contig1357: 55336-55984
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15590g
description hypothetical protein
nr
ID XP_006383447.1
description hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
swissprot
ID Q9SRT2
description Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1
trembl
ID U5GG63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_080 0.0 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
2 Hb_002539_090 0.087428953 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
3 Hb_000046_110 0.0898820729 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
4 Hb_010436_060 0.0918864367 - - hypothetical protein CISIN_1g0003801mg, partial [Citrus sinensis]
5 Hb_000751_130 0.093873518 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
6 Hb_006641_010 0.0991261676 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
7 Hb_029866_070 0.0994386063 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
8 Hb_023292_010 0.1007978728 - - Cucumisin precursor, putative [Ricinus communis]
9 Hb_001258_080 0.100960583 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]
10 Hb_001811_020 0.1010343706 - - conserved hypothetical protein [Ricinus communis]
11 Hb_180301_010 0.1039363341 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
12 Hb_000224_120 0.1039626603 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
13 Hb_001173_040 0.1041922356 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_001073_050 0.1048916581 - - -
15 Hb_001829_060 0.1062200433 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
16 Hb_000172_030 0.1068400631 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
17 Hb_154648_010 0.1093842087 - - PREDICTED: uncharacterized protein LOC105634412 isoform X2 [Jatropha curcas]
18 Hb_003964_100 0.1127135804 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
19 Hb_008311_010 0.1129178638 - - hypothetical protein CARUB_v10003781mg [Capsella rubella]
20 Hb_000963_180 0.1129494133 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001357_080 Hb_001357_080 Hb_002539_090 Hb_002539_090 Hb_001357_080--Hb_002539_090 Hb_000046_110 Hb_000046_110 Hb_001357_080--Hb_000046_110 Hb_010436_060 Hb_010436_060 Hb_001357_080--Hb_010436_060 Hb_000751_130 Hb_000751_130 Hb_001357_080--Hb_000751_130 Hb_006641_010 Hb_006641_010 Hb_001357_080--Hb_006641_010 Hb_029866_070 Hb_029866_070 Hb_001357_080--Hb_029866_070 Hb_001258_080 Hb_001258_080 Hb_002539_090--Hb_001258_080 Hb_002539_090--Hb_000751_130 Hb_001173_040 Hb_001173_040 Hb_002539_090--Hb_001173_040 Hb_007594_090 Hb_007594_090 Hb_002539_090--Hb_007594_090 Hb_000172_030 Hb_000172_030 Hb_002539_090--Hb_000172_030 Hb_001109_020 Hb_001109_020 Hb_000046_110--Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_000046_110--Hb_001829_060 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003632_010 Hb_003632_010 Hb_000046_110--Hb_003632_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_010436_060--Hb_006641_010 Hb_003964_100 Hb_003964_100 Hb_010436_060--Hb_003964_100 Hb_011671_220 Hb_011671_220 Hb_010436_060--Hb_011671_220 Hb_001235_030 Hb_001235_030 Hb_010436_060--Hb_001235_030 Hb_001073_050 Hb_001073_050 Hb_010436_060--Hb_001073_050 Hb_005117_010 Hb_005117_010 Hb_010436_060--Hb_005117_010 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_004032_100 Hb_004032_100 Hb_000751_130--Hb_004032_100 Hb_000751_130--Hb_000172_030 Hb_006641_010--Hb_005117_010 Hb_074979_020 Hb_074979_020 Hb_006641_010--Hb_074979_020 Hb_000028_140 Hb_000028_140 Hb_006641_010--Hb_000028_140 Hb_001155_030 Hb_001155_030 Hb_006641_010--Hb_001155_030 Hb_002759_060 Hb_002759_060 Hb_006641_010--Hb_002759_060 Hb_000963_180 Hb_000963_180 Hb_029866_070--Hb_000963_180 Hb_029866_070--Hb_003964_100 Hb_008300_010 Hb_008300_010 Hb_029866_070--Hb_008300_010 Hb_001461_010 Hb_001461_010 Hb_029866_070--Hb_001461_010 Hb_010174_020 Hb_010174_020 Hb_029866_070--Hb_010174_020 Hb_000152_550 Hb_000152_550 Hb_029866_070--Hb_000152_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49387 1.46342 1.49428 6.57904 6.41056 18.3405
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2898 17.2211 21.618 4.08261 3.83625

CAGE analysis