Hb_001357_100

Information

Type -
Description -
Location Contig1357: 75046-77392
Sequence    

Annotation

kegg
ID cic:CICLE_v10022993mg
description hypothetical protein
nr
ID XP_012070895.1
description PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
swissprot
ID P55857
description Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica GN=SUMO1 PE=1 SV=1
trembl
ID A0A067KW36
description Small ubiquitin-related modifier OS=Jatropha curcas GN=JCGZ_00940 PE=3 SV=1
Gene Ontology
ID GO:0005634
description small ubiquitin-related modifier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09913: 62696-77561 , PASA_asmbl_09915: 58218-77552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_100 0.0 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
2 Hb_000584_020 0.1160809035 - - hypothetical protein PHAVU_002G233500g, partial [Phaseolus vulgaris]
3 Hb_014783_010 0.1341875438 - - cold-inducible RNA binding protein, putative [Ricinus communis]
4 Hb_000473_020 0.1424411757 - - expressed protein, putative [Ricinus communis]
5 Hb_178227_010 0.1465756975 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
6 Hb_003536_110 0.1466492802 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
7 Hb_000268_010 0.1559205898 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001538_090 0.1595601134 - - 40S ribosomal protein S29 [Morus notabilis]
9 Hb_082407_010 0.1605240025 - - protein farnesyltransferase alpha subunit, putative [Ricinus communis]
10 Hb_078185_010 0.1632898528 - - -
11 Hb_002289_120 0.1634703435 - - PREDICTED: uncharacterized protein LOC105645218 isoform X2 [Jatropha curcas]
12 Hb_005305_090 0.1658541847 - - PREDICTED: uncharacterized protein LOC105112272 [Populus euphratica]
13 Hb_000975_250 0.1662831401 - - PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like [Jatropha curcas]
14 Hb_026314_020 0.1700207476 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
15 Hb_016604_030 0.1723262683 - - histone H4 [Zea mays]
16 Hb_134949_020 0.1743560886 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]
17 Hb_005667_040 0.1755764515 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
18 Hb_000359_150 0.1765039122 - - PREDICTED: protein Mpv17-like isoform X1 [Jatropha curcas]
19 Hb_005000_330 0.1777904072 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003943_130 0.1783849513 - - PREDICTED: uncharacterized protein LOC105636341 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_100 Hb_001357_100 Hb_000584_020 Hb_000584_020 Hb_001357_100--Hb_000584_020 Hb_014783_010 Hb_014783_010 Hb_001357_100--Hb_014783_010 Hb_000473_020 Hb_000473_020 Hb_001357_100--Hb_000473_020 Hb_178227_010 Hb_178227_010 Hb_001357_100--Hb_178227_010 Hb_003536_110 Hb_003536_110 Hb_001357_100--Hb_003536_110 Hb_000268_010 Hb_000268_010 Hb_001357_100--Hb_000268_010 Hb_000584_020--Hb_178227_010 Hb_000584_020--Hb_000473_020 Hb_001754_070 Hb_001754_070 Hb_000584_020--Hb_001754_070 Hb_005667_040 Hb_005667_040 Hb_000584_020--Hb_005667_040 Hb_000352_290 Hb_000352_290 Hb_000584_020--Hb_000352_290 Hb_014783_010--Hb_000268_010 Hb_000186_190 Hb_000186_190 Hb_014783_010--Hb_000186_190 Hb_003943_130 Hb_003943_130 Hb_014783_010--Hb_003943_130 Hb_002289_120 Hb_002289_120 Hb_014783_010--Hb_002289_120 Hb_000101_270 Hb_000101_270 Hb_014783_010--Hb_000101_270 Hb_000473_020--Hb_003536_110 Hb_000473_020--Hb_005667_040 Hb_005000_330 Hb_005000_330 Hb_000473_020--Hb_005000_330 Hb_004195_080 Hb_004195_080 Hb_000473_020--Hb_004195_080 Hb_026314_020 Hb_026314_020 Hb_000473_020--Hb_026314_020 Hb_000359_150 Hb_000359_150 Hb_000473_020--Hb_000359_150 Hb_002900_160 Hb_002900_160 Hb_178227_010--Hb_002900_160 Hb_178227_010--Hb_014783_010 Hb_007044_130 Hb_007044_130 Hb_178227_010--Hb_007044_130 Hb_002783_270 Hb_002783_270 Hb_178227_010--Hb_002783_270 Hb_009476_020 Hb_009476_020 Hb_178227_010--Hb_009476_020 Hb_001538_090 Hb_001538_090 Hb_003536_110--Hb_001538_090 Hb_031089_040 Hb_031089_040 Hb_003536_110--Hb_031089_040 Hb_078185_010 Hb_078185_010 Hb_003536_110--Hb_078185_010 Hb_001699_040 Hb_001699_040 Hb_003536_110--Hb_001699_040 Hb_005867_020 Hb_005867_020 Hb_003536_110--Hb_005867_020 Hb_000268_010--Hb_003943_130 Hb_082407_010 Hb_082407_010 Hb_000268_010--Hb_082407_010 Hb_004807_060 Hb_004807_060 Hb_000268_010--Hb_004807_060 Hb_002742_050 Hb_002742_050 Hb_000268_010--Hb_002742_050 Hb_000268_010--Hb_002289_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.8254 10.3737 36.0413 68.6007 15.9295 49.7658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.7383 97.747 17.7882 3.03448 9.0279

CAGE analysis