Hb_001357_140

Information

Type -
Description -
Location Contig1357: 104070-107069
Sequence    

Annotation

kegg
ID rcu:RCOM_0278070
description hypothetical protein
nr
ID XP_002530359.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8RWE8
description GDP-L-galactose phosphorylase 1 OS=Arabidopsis thaliana GN=VTC2 PE=1 SV=1
trembl
ID B9SWJ0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0278070 PE=4 SV=1
Gene Ontology
ID GO:0016779
description gdp-l-galactose phosphorylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09918: 103895-106931
cDNA
(Sanger)
(ID:Location)		 044_L05.ab1: 106109-106862

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000421_180 0.099593663 - - ATP binding protein, putative [Ricinus communis]
3 Hb_001357_180 0.104736337 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
4 Hb_003787_020 0.1152061928 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
5 Hb_001960_040 0.1211941073 - - PREDICTED: CTP synthase [Jatropha curcas]
6 Hb_003376_040 0.1275593435 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
7 Hb_001671_080 0.1302209771 - - amino acid binding protein, putative [Ricinus communis]
8 Hb_000049_120 0.131352395 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
9 Hb_001051_100 0.1329094387 transcription factor TF Family: ARF Auxin response factor, putative [Ricinus communis]
10 Hb_007908_020 0.1339555002 - - zinc finger family protein [Populus trichocarpa]
11 Hb_005725_080 0.1342092565 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A10 [Jatropha curcas]
12 Hb_000761_020 0.1361237054 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
13 Hb_000676_220 0.1369898875 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_002188_130 0.137739518 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
15 Hb_001360_040 0.1427320329 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
16 Hb_005433_040 0.1428166586 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
17 Hb_000139_410 0.1428873702 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
18 Hb_114893_020 0.1432816871 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000096_090 0.1433805096 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
20 Hb_000123_120 0.1434161794 - - actin depolymerizing factor 4 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001357_140 Hb_001357_140 Hb_000421_180 Hb_000421_180 Hb_001357_140--Hb_000421_180 Hb_001357_180 Hb_001357_180 Hb_001357_140--Hb_001357_180 Hb_003787_020 Hb_003787_020 Hb_001357_140--Hb_003787_020 Hb_001960_040 Hb_001960_040 Hb_001357_140--Hb_001960_040 Hb_003376_040 Hb_003376_040 Hb_001357_140--Hb_003376_040 Hb_001671_080 Hb_001671_080 Hb_001357_140--Hb_001671_080 Hb_000421_180--Hb_001960_040 Hb_114893_020 Hb_114893_020 Hb_000421_180--Hb_114893_020 Hb_000421_180--Hb_001357_180 Hb_002188_130 Hb_002188_130 Hb_000421_180--Hb_002188_130 Hb_000317_490 Hb_000317_490 Hb_000421_180--Hb_000317_490 Hb_005000_210 Hb_005000_210 Hb_001357_180--Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_001357_180--Hb_000139_410 Hb_001357_180--Hb_002188_130 Hb_000031_060 Hb_000031_060 Hb_001357_180--Hb_000031_060 Hb_003732_020 Hb_003732_020 Hb_001357_180--Hb_003732_020 Hb_000445_180 Hb_000445_180 Hb_001357_180--Hb_000445_180 Hb_006647_020 Hb_006647_020 Hb_003787_020--Hb_006647_020 Hb_000030_150 Hb_000030_150 Hb_003787_020--Hb_000030_150 Hb_002006_090 Hb_002006_090 Hb_003787_020--Hb_002006_090 Hb_061802_020 Hb_061802_020 Hb_003787_020--Hb_061802_020 Hb_007924_020 Hb_007924_020 Hb_003787_020--Hb_007924_020 Hb_000614_230 Hb_000614_230 Hb_003787_020--Hb_000614_230 Hb_001960_040--Hb_002188_130 Hb_000412_110 Hb_000412_110 Hb_001960_040--Hb_000412_110 Hb_000805_120 Hb_000805_120 Hb_001960_040--Hb_000805_120 Hb_001960_040--Hb_001357_180 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_001396_180 Hb_001396_180 Hb_003376_040--Hb_001396_180 Hb_000096_090 Hb_000096_090 Hb_003376_040--Hb_000096_090 Hb_004223_130 Hb_004223_130 Hb_001671_080--Hb_004223_130 Hb_003052_100 Hb_003052_100 Hb_001671_080--Hb_003052_100 Hb_158092_070 Hb_158092_070 Hb_001671_080--Hb_158092_070 Hb_000975_290 Hb_000975_290 Hb_001671_080--Hb_000975_290 Hb_001671_080--Hb_007908_020 Hb_001047_020 Hb_001047_020 Hb_001671_080--Hb_001047_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
539.921 130.738 110.529 128.274 175.78 229.971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
464.773 184.05 495.289 63.7242 77.1274

CAGE analysis