Hb_001357_150

Information

Type -
Description -
Location Contig1357: 111027-115373
Sequence    

Annotation

kegg
ID pop:POPTR_0011s08930g
description POPTRDRAFT_568517; hypothetical protein
nr
ID XP_002317329.1
description hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
swissprot
ID O32107
description Uncharacterized membrane protein YuiD OS=Bacillus subtilis (strain 168) GN=yuiD PE=4 SV=1
trembl
ID B9I154
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s08930g PE=4 SV=1
Gene Ontology
ID GO:0004601
description acid phosphatase vanadium-dependent haloperoxidase-related protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09919: 114050-114781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_150 0.0 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
2 Hb_007451_010 0.058303068 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
3 Hb_000220_010 0.0634309729 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
4 Hb_005730_120 0.0705944557 - - PREDICTED: protein WHI4 [Jatropha curcas]
5 Hb_001599_040 0.0706738668 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
6 Hb_013738_020 0.0741094258 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
7 Hb_172632_120 0.0800971697 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002205_110 0.0813123355 - - conserved hypothetical protein [Ricinus communis]
9 Hb_022181_030 0.0818750401 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
10 Hb_000522_150 0.0820387067 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
11 Hb_000028_370 0.0828126211 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
12 Hb_001922_150 0.0833133604 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
13 Hb_001287_080 0.0833959343 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007416_340 0.0838430376 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_007878_010 0.0855773644 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
16 Hb_001214_060 0.0862188043 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
17 Hb_001142_030 0.0869226366 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
18 Hb_000334_280 0.0873900925 - - PREDICTED: protein FRA10AC1 [Jatropha curcas]
19 Hb_002936_010 0.0878721349 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_024958_010 0.0879973774 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_150 Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_001357_150--Hb_007451_010 Hb_000220_010 Hb_000220_010 Hb_001357_150--Hb_000220_010 Hb_005730_120 Hb_005730_120 Hb_001357_150--Hb_005730_120 Hb_001599_040 Hb_001599_040 Hb_001357_150--Hb_001599_040 Hb_013738_020 Hb_013738_020 Hb_001357_150--Hb_013738_020 Hb_172632_120 Hb_172632_120 Hb_001357_150--Hb_172632_120 Hb_007451_010--Hb_000220_010 Hb_156635_010 Hb_156635_010 Hb_007451_010--Hb_156635_010 Hb_002740_030 Hb_002740_030 Hb_007451_010--Hb_002740_030 Hb_001142_030 Hb_001142_030 Hb_007451_010--Hb_001142_030 Hb_022181_030 Hb_022181_030 Hb_007451_010--Hb_022181_030 Hb_008453_140 Hb_008453_140 Hb_000220_010--Hb_008453_140 Hb_014720_120 Hb_014720_120 Hb_000220_010--Hb_014720_120 Hb_010381_090 Hb_010381_090 Hb_000220_010--Hb_010381_090 Hb_120410_010 Hb_120410_010 Hb_000220_010--Hb_120410_010 Hb_000220_010--Hb_002740_030 Hb_005271_220 Hb_005271_220 Hb_005730_120--Hb_005271_220 Hb_032808_010 Hb_032808_010 Hb_005730_120--Hb_032808_010 Hb_002303_070 Hb_002303_070 Hb_005730_120--Hb_002303_070 Hb_005730_120--Hb_001599_040 Hb_004453_130 Hb_004453_130 Hb_005730_120--Hb_004453_130 Hb_002311_180 Hb_002311_180 Hb_005730_120--Hb_002311_180 Hb_001599_040--Hb_002303_070 Hb_001946_400 Hb_001946_400 Hb_001599_040--Hb_001946_400 Hb_006831_140 Hb_006831_140 Hb_001599_040--Hb_006831_140 Hb_000640_170 Hb_000640_170 Hb_001599_040--Hb_000640_170 Hb_007390_010 Hb_007390_010 Hb_001599_040--Hb_007390_010 Hb_000116_450 Hb_000116_450 Hb_013738_020--Hb_000116_450 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_002110_080 Hb_002110_080 Hb_013738_020--Hb_002110_080 Hb_000025_180 Hb_000025_180 Hb_172632_120--Hb_000025_180 Hb_000025_630 Hb_000025_630 Hb_172632_120--Hb_000025_630 Hb_001408_040 Hb_001408_040 Hb_172632_120--Hb_001408_040 Hb_000603_150 Hb_000603_150 Hb_172632_120--Hb_000603_150 Hb_001959_110 Hb_001959_110 Hb_172632_120--Hb_001959_110 Hb_172632_120--Hb_001142_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.14233 2.88168 2.87323 4.37858 2.61681 3.9914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54599 4.96617 1.76676 2.76891 2.31593

CAGE analysis