Hb_001357_160

Information

Type -
Description -
Location Contig1357: 116024-116611
Sequence    

Annotation

kegg
ID rcu:RCOM_0752610
description hypothetical protein
nr
ID XP_002529461.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STZ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0752610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_160 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002243_030 0.0754040486 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
3 Hb_074240_030 0.0772905665 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
4 Hb_015299_040 0.0789074048 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
5 Hb_158845_010 0.0873216866 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
6 Hb_001856_190 0.0890060122 - - SP1L, putative [Ricinus communis]
7 Hb_000010_320 0.0955264014 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
8 Hb_023344_100 0.0985543441 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
9 Hb_003777_260 0.103029345 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
10 Hb_003090_020 0.1047045296 - - PREDICTED: uncharacterized protein LOC105646662 [Jatropha curcas]
11 Hb_001386_060 0.1068672397 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
12 Hb_002045_160 0.111602775 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
13 Hb_054615_010 0.1140833716 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
14 Hb_000107_580 0.1148645537 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
15 Hb_001439_050 0.1162227331 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
16 Hb_004109_100 0.1183101711 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
17 Hb_002170_060 0.1190969621 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
18 Hb_001053_170 0.1230524131 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
19 Hb_108576_020 0.1232610764 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_550 0.1256088963 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_160 Hb_001357_160 Hb_002243_030 Hb_002243_030 Hb_001357_160--Hb_002243_030 Hb_074240_030 Hb_074240_030 Hb_001357_160--Hb_074240_030 Hb_015299_040 Hb_015299_040 Hb_001357_160--Hb_015299_040 Hb_158845_010 Hb_158845_010 Hb_001357_160--Hb_158845_010 Hb_001856_190 Hb_001856_190 Hb_001357_160--Hb_001856_190 Hb_000010_320 Hb_000010_320 Hb_001357_160--Hb_000010_320 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_002243_030--Hb_015299_040 Hb_004109_100 Hb_004109_100 Hb_002243_030--Hb_004109_100 Hb_003777_260 Hb_003777_260 Hb_002243_030--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_002243_030--Hb_002170_060 Hb_074240_030--Hb_000010_320 Hb_074240_030--Hb_001856_190 Hb_074240_030--Hb_015299_040 Hb_054615_010 Hb_054615_010 Hb_074240_030--Hb_054615_010 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_015299_040--Hb_158845_010 Hb_015299_040--Hb_000010_320 Hb_015299_040--Hb_054615_010 Hb_158845_010--Hb_000010_320 Hb_059832_010 Hb_059832_010 Hb_158845_010--Hb_059832_010 Hb_158845_010--Hb_074240_030 Hb_158845_010--Hb_054615_010 Hb_001386_060 Hb_001386_060 Hb_001856_190--Hb_001386_060 Hb_001856_190--Hb_003090_020 Hb_003592_040 Hb_003592_040 Hb_001856_190--Hb_003592_040 Hb_001856_190--Hb_000010_320 Hb_000010_320--Hb_059832_010 Hb_000397_060 Hb_000397_060 Hb_000010_320--Hb_000397_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447878 0.427418 22.7043 6.47981 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0817881 0.142611 1.17538 4.8905

CAGE analysis