Hb_001357_180

Information

Type -
Description -
Location Contig1357: 127074-129991
Sequence    

Annotation

kegg
ID cic:CICLE_v10010510mg
description hypothetical protein
nr
ID KDO62096.1
description hypothetical protein CISIN_1g036415mg [Citrus sinensis]
swissprot
ID Q6GQ23
description EGF domain-specific O-linked N-acetylglucosamine transferase OS=Xenopus laevis GN=eogt PE=2 SV=1
trembl
ID A0A067FFW2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036415mg PE=4 SV=1
Gene Ontology
ID GO:0016757
description protein o-linked-mannose beta- -n-acetylglucosaminyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09922: 126129-126656 , PASA_asmbl_09923: 127253-128958 , PASA_asmbl_09924: 127545-128958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_180 0.0 - - hypothetical protein CISIN_1g036415mg [Citrus sinensis]
2 Hb_005000_210 0.0875564297 - - PREDICTED: translation machinery-associated protein 22 [Jatropha curcas]
3 Hb_000139_410 0.0993306709 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
4 Hb_002188_130 0.1005072782 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
5 Hb_000031_060 0.1037641999 - - PREDICTED: E3 ubiquitin-protein ligase RNF12-A-like [Jatropha curcas]
6 Hb_003732_020 0.1042059984 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
7 Hb_000445_180 0.1042332686 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
8 Hb_001357_140 0.104736337 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005433_040 0.1074170799 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
10 Hb_004812_010 0.1106704619 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
11 Hb_000049_120 0.1115020873 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
12 Hb_011224_110 0.1130609134 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
13 Hb_001195_690 0.1154374791 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
14 Hb_000679_010 0.115443514 - - PREDICTED: uncharacterized protein LOC105637663 [Jatropha curcas]
15 Hb_002685_140 0.116872947 - - PREDICTED: membrin-11 [Jatropha curcas]
16 Hb_003787_020 0.1170590835 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
17 Hb_000111_360 0.1173583005 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000175_440 0.1186325061 - - signal peptidase family protein [Populus trichocarpa]
19 Hb_005699_070 0.1188361258 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH107 [Jatropha curcas]
20 Hb_005941_040 0.1195109769 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_180 Hb_001357_180 Hb_005000_210 Hb_005000_210 Hb_001357_180--Hb_005000_210 Hb_000139_410 Hb_000139_410 Hb_001357_180--Hb_000139_410 Hb_002188_130 Hb_002188_130 Hb_001357_180--Hb_002188_130 Hb_000031_060 Hb_000031_060 Hb_001357_180--Hb_000031_060 Hb_003732_020 Hb_003732_020 Hb_001357_180--Hb_003732_020 Hb_000445_180 Hb_000445_180 Hb_001357_180--Hb_000445_180 Hb_005000_210--Hb_000139_410 Hb_005000_210--Hb_002188_130 Hb_000866_270 Hb_000866_270 Hb_005000_210--Hb_000866_270 Hb_000367_200 Hb_000367_200 Hb_005000_210--Hb_000367_200 Hb_023226_040 Hb_023226_040 Hb_005000_210--Hb_023226_040 Hb_003078_040 Hb_003078_040 Hb_005000_210--Hb_003078_040 Hb_010381_070 Hb_010381_070 Hb_000139_410--Hb_010381_070 Hb_001584_330 Hb_001584_330 Hb_000139_410--Hb_001584_330 Hb_004109_200 Hb_004109_200 Hb_000139_410--Hb_004109_200 Hb_001623_420 Hb_001623_420 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_001269_680 Hb_001269_680 Hb_002188_130--Hb_001269_680 Hb_005147_100 Hb_005147_100 Hb_002188_130--Hb_005147_100 Hb_000230_200 Hb_000230_200 Hb_002188_130--Hb_000230_200 Hb_004678_040 Hb_004678_040 Hb_002188_130--Hb_004678_040 Hb_000141_040 Hb_000141_040 Hb_002188_130--Hb_000141_040 Hb_000031_060--Hb_000445_180 Hb_011671_430 Hb_011671_430 Hb_000031_060--Hb_011671_430 Hb_000127_130 Hb_000127_130 Hb_000031_060--Hb_000127_130 Hb_000521_320 Hb_000521_320 Hb_000031_060--Hb_000521_320 Hb_000059_330 Hb_000059_330 Hb_000031_060--Hb_000059_330 Hb_003092_040 Hb_003092_040 Hb_000031_060--Hb_003092_040 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_001360_040 Hb_001360_040 Hb_003732_020--Hb_001360_040 Hb_002685_140 Hb_002685_140 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_005941_040 Hb_005941_040 Hb_000445_180--Hb_005941_040 Hb_009615_150 Hb_009615_150 Hb_000445_180--Hb_009615_150 Hb_000224_170 Hb_000224_170 Hb_000445_180--Hb_000224_170 Hb_126643_020 Hb_126643_020 Hb_000445_180--Hb_126643_020 Hb_000445_180--Hb_001623_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.89037 2.18592 1.69866 2.31491 3.43295 2.26741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.16034 3.37935 5.40205 1.50694 1.03878

CAGE analysis