Hb_001357_250

Information

Type -
Description -
Location Contig1357: 170580-185884
Sequence    

Annotation

kegg
ID rcu:RCOM_0752350
description esophageal cancer associated protein, putative
nr
ID XP_012070871.1
description PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
swissprot
ID Q8BWQ6
description UPF0505 protein C16orf62 homolog OS=Mus musculus PE=2 SV=2
trembl
ID A0A067KSP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00919 PE=4 SV=1
Gene Ontology
ID GO:0044464
description upf0505 protein c16orf62 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09930: 170702-189206 , PASA_asmbl_09931: 183789-185809 , PASA_asmbl_09932: 182896-183693 , PASA_asmbl_09933: 173746-175800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_250 0.0 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
2 Hb_033642_090 0.0447862548 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004410_030 0.049110747 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000417_130 0.0527343076 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
5 Hb_123915_040 0.0578183699 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
6 Hb_000907_110 0.0636429537 - - dihydroxyacetone kinase family protein [Populus trichocarpa]
7 Hb_063716_100 0.0643740989 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
8 Hb_004254_090 0.065860029 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
9 Hb_002784_020 0.0669830903 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
10 Hb_000617_180 0.07060135 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
11 Hb_004619_030 0.070661421 - - PREDICTED: uncharacterized protein LOC105633364 isoform X1 [Jatropha curcas]
12 Hb_031340_050 0.0715909057 - - PREDICTED: tropinone reductase 1-like isoform X1 [Jatropha curcas]
13 Hb_000011_200 0.0738886327 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
14 Hb_000137_090 0.0752628452 - - PREDICTED: HAUS augmin-like complex subunit 3 [Vitis vinifera]
15 Hb_002197_050 0.0754419072 - - hypothetical protein CICLE_v10002157mg [Citrus clementina]
16 Hb_006831_140 0.0775055113 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
17 Hb_001235_150 0.0775181597 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
18 Hb_003025_110 0.0778620179 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_003163_020 0.078360664 - - PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X1 [Jatropha curcas]
20 Hb_000139_290 0.078702869 - - PREDICTED: peroxisomal adenine nucleotide carrier 1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_250 Hb_001357_250 Hb_033642_090 Hb_033642_090 Hb_001357_250--Hb_033642_090 Hb_004410_030 Hb_004410_030 Hb_001357_250--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_001357_250--Hb_000417_130 Hb_123915_040 Hb_123915_040 Hb_001357_250--Hb_123915_040 Hb_000907_110 Hb_000907_110 Hb_001357_250--Hb_000907_110 Hb_063716_100 Hb_063716_100 Hb_001357_250--Hb_063716_100 Hb_033642_090--Hb_000907_110 Hb_002784_020 Hb_002784_020 Hb_033642_090--Hb_002784_020 Hb_006831_140 Hb_006831_140 Hb_033642_090--Hb_006831_140 Hb_033642_090--Hb_123915_040 Hb_000696_230 Hb_000696_230 Hb_033642_090--Hb_000696_230 Hb_000011_200 Hb_000011_200 Hb_004410_030--Hb_000011_200 Hb_003025_110 Hb_003025_110 Hb_004410_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_004410_030--Hb_000225_040 Hb_002271_030 Hb_002271_030 Hb_004410_030--Hb_002271_030 Hb_004619_030 Hb_004619_030 Hb_004410_030--Hb_004619_030 Hb_000417_130--Hb_123915_040 Hb_001357_350 Hb_001357_350 Hb_000417_130--Hb_001357_350 Hb_001268_240 Hb_001268_240 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_000417_130--Hb_063716_100 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150 Hb_000181_400 Hb_000181_400 Hb_000907_110--Hb_000181_400 Hb_028285_010 Hb_028285_010 Hb_000907_110--Hb_028285_010 Hb_004324_130 Hb_004324_130 Hb_000907_110--Hb_004324_130 Hb_000130_410 Hb_000130_410 Hb_000907_110--Hb_000130_410 Hb_000351_120 Hb_000351_120 Hb_063716_100--Hb_000351_120 Hb_000345_380 Hb_000345_380 Hb_063716_100--Hb_000345_380 Hb_168978_030 Hb_168978_030 Hb_063716_100--Hb_168978_030 Hb_000617_180 Hb_000617_180 Hb_063716_100--Hb_000617_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73106 5.2309 6.43146 5.15925 7.94175 7.58333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.14587 7.84516 6.38769 10.0951 5.16219

CAGE analysis