Hb_001357_260

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1357: 205049-207687
Sequence    

Annotation

kegg
ID rcu:RCOM_1303670
description WRKY transcription factor, putative
nr
ID XP_002529927.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9XEC3
description Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1
trembl
ID B9SVA8
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_1303670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_260 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_112082_030 0.0748546163 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_002917_010 0.0750309242 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
4 Hb_000976_020 0.0837052407 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
5 Hb_002965_020 0.0897627413 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
6 Hb_004586_080 0.0911505193 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
7 Hb_000327_300 0.0959778726 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
8 Hb_000189_260 0.0991596266 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008080_040 0.1012051302 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
10 Hb_016172_010 0.1066574128 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
11 Hb_039342_030 0.1087519044 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002890_400 0.1102177879 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
13 Hb_008705_070 0.1123139261 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
14 Hb_002048_010 0.1140647401 - - unknown [Lotus japonicus]
15 Hb_000245_140 0.1153779434 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
16 Hb_008406_010 0.116524145 - - PREDICTED: tyrosine aminotransferase-like [Populus euphratica]
17 Hb_000758_030 0.1176014629 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
18 Hb_000411_060 0.1181212543 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_020332_040 0.1188311136 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
20 Hb_008225_080 0.1191035427 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]

Gene co-expression network

sample Hb_001357_260 Hb_001357_260 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_002917_010 Hb_002917_010 Hb_001357_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_001357_260--Hb_000976_020 Hb_002965_020 Hb_002965_020 Hb_001357_260--Hb_002965_020 Hb_004586_080 Hb_004586_080 Hb_001357_260--Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_001357_260--Hb_000327_300 Hb_000189_260 Hb_000189_260 Hb_112082_030--Hb_000189_260 Hb_112082_030--Hb_002917_010 Hb_008406_010 Hb_008406_010 Hb_112082_030--Hb_008406_010 Hb_005511_050 Hb_005511_050 Hb_112082_030--Hb_005511_050 Hb_002890_400 Hb_002890_400 Hb_112082_030--Hb_002890_400 Hb_002917_010--Hb_000189_260 Hb_002917_010--Hb_000976_020 Hb_002917_010--Hb_002965_020 Hb_146023_010 Hb_146023_010 Hb_002917_010--Hb_146023_010 Hb_064398_010 Hb_064398_010 Hb_002917_010--Hb_064398_010 Hb_008225_080 Hb_008225_080 Hb_000976_020--Hb_008225_080 Hb_000758_030 Hb_000758_030 Hb_000976_020--Hb_000758_030 Hb_000976_020--Hb_000189_260 Hb_000976_020--Hb_002965_020 Hb_020332_040 Hb_020332_040 Hb_000976_020--Hb_020332_040 Hb_000245_140 Hb_000245_140 Hb_002965_020--Hb_000245_140 Hb_002048_010 Hb_002048_010 Hb_002965_020--Hb_002048_010 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_004586_080--Hb_000327_300 Hb_004586_080--Hb_008080_040 Hb_000407_110 Hb_000407_110 Hb_004586_080--Hb_000407_110 Hb_007483_030 Hb_007483_030 Hb_004586_080--Hb_007483_030 Hb_008705_070 Hb_008705_070 Hb_004586_080--Hb_008705_070 Hb_000327_300--Hb_008080_040 Hb_000327_300--Hb_002965_020 Hb_000327_300--Hb_000407_110 Hb_001168_010 Hb_001168_010 Hb_000327_300--Hb_001168_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.777273 0.229561 0.139073 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252739 0.0198854 0 4.94174 0.0837836

CAGE analysis