Hb_001357_300

Information

Type -
Description -
Location Contig1357: 223478-231462
Sequence    

Annotation

kegg
ID rcu:RCOM_1303610
description imidazole glycerol phosphate synthase subunit hisf, putative (EC:5.3.1.16)
nr
ID XP_012070864.1
description PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9SZ30
description Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana GN=HISN4 PE=2 SV=1
trembl
ID A0A067KSG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00913 PE=3 SV=1
Gene Ontology
ID GO:0009570
description imidazole glycerol phosphate synthase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09938: 223467-231630 , PASA_asmbl_09939: 229364-229657
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_300 0.0 - - PREDICTED: imidazole glycerol phosphate synthase hisHF, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001507_040 0.0852165684 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000483_260 0.0958883475 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
4 Hb_001414_030 0.0986129568 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
5 Hb_034380_020 0.0990981783 - - PREDICTED: phosphoglycerate mutase-like [Jatropha curcas]
6 Hb_000676_150 0.1041640441 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
7 Hb_001726_020 0.1051542618 - - PREDICTED: endophilin-A1 [Jatropha curcas]
8 Hb_010812_120 0.1075932522 - - hypothetical protein JCGZ_03293 [Jatropha curcas]
9 Hb_000165_160 0.1084797555 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
10 Hb_001314_070 0.1089419995 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005539_280 0.1093789649 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
12 Hb_002014_020 0.1095622296 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
13 Hb_002660_070 0.1098588941 - - PREDICTED: gamma carbonic anhydrase 1, mitochondrial [Eucalyptus grandis]
14 Hb_001663_050 0.1101714539 - - PREDICTED: GPN-loop GTPase 3 [Jatropha curcas]
15 Hb_000538_070 0.1111058748 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
16 Hb_011942_090 0.1113020617 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X1 [Jatropha curcas]
17 Hb_000329_760 0.111307185 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
18 Hb_000820_090 0.111934688 - - -
19 Hb_000982_080 0.1125155233 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
20 Hb_005488_200 0.1125542302 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_300 Hb_001357_300 Hb_001507_040 Hb_001507_040 Hb_001357_300--Hb_001507_040 Hb_000483_260 Hb_000483_260 Hb_001357_300--Hb_000483_260 Hb_001414_030 Hb_001414_030 Hb_001357_300--Hb_001414_030 Hb_034380_020 Hb_034380_020 Hb_001357_300--Hb_034380_020 Hb_000676_150 Hb_000676_150 Hb_001357_300--Hb_000676_150 Hb_001726_020 Hb_001726_020 Hb_001357_300--Hb_001726_020 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_000445_040 Hb_000445_040 Hb_001507_040--Hb_000445_040 Hb_000165_160 Hb_000165_160 Hb_001507_040--Hb_000165_160 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070 Hb_000329_760 Hb_000329_760 Hb_001414_030--Hb_000329_760 Hb_016522_010 Hb_016522_010 Hb_001414_030--Hb_016522_010 Hb_000982_080 Hb_000982_080 Hb_001414_030--Hb_000982_080 Hb_001414_030--Hb_034380_020 Hb_011942_090 Hb_011942_090 Hb_001414_030--Hb_011942_090 Hb_005551_040 Hb_005551_040 Hb_034380_020--Hb_005551_040 Hb_004889_010 Hb_004889_010 Hb_034380_020--Hb_004889_010 Hb_001489_080 Hb_001489_080 Hb_034380_020--Hb_001489_080 Hb_002014_020 Hb_002014_020 Hb_034380_020--Hb_002014_020 Hb_007416_060 Hb_007416_060 Hb_034380_020--Hb_007416_060 Hb_003697_040 Hb_003697_040 Hb_034380_020--Hb_003697_040 Hb_005183_120 Hb_005183_120 Hb_000676_150--Hb_005183_120 Hb_000676_150--Hb_034380_020 Hb_000482_090 Hb_000482_090 Hb_000676_150--Hb_000482_090 Hb_000676_150--Hb_011942_090 Hb_000676_150--Hb_000165_160 Hb_127552_030 Hb_127552_030 Hb_000676_150--Hb_127552_030 Hb_005539_280 Hb_005539_280 Hb_001726_020--Hb_005539_280 Hb_000250_060 Hb_000250_060 Hb_001726_020--Hb_000250_060 Hb_000504_140 Hb_000504_140 Hb_001726_020--Hb_000504_140 Hb_005779_060 Hb_005779_060 Hb_001726_020--Hb_005779_060 Hb_000783_020 Hb_000783_020 Hb_001726_020--Hb_000783_020 Hb_000529_170 Hb_000529_170 Hb_001726_020--Hb_000529_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74692 4.71552 7.8862 6.05057 5.01725 7.44964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2403 13.1773 18.1711 13.7624 6.55885

CAGE analysis