Hb_001357_310

Information

Type -
Description -
Location Contig1357: 232913-238972
Sequence    

Annotation

kegg
ID rcu:RCOM_1303600
description dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative (EC:2.3.1.61)
nr
ID XP_012070861.1
description PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
swissprot
ID Q8H107
description Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=2 SV=2
trembl
ID A0A067L3S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00912 PE=3 SV=1
Gene Ontology
ID GO:0045252
description dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09940: 235203-235693 , PASA_asmbl_09942: 237007-237488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_310 0.0 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
2 Hb_010775_030 0.0447889194 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
3 Hb_007257_060 0.0750925875 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
4 Hb_002014_010 0.0781049375 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_012092_050 0.0784463336 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
6 Hb_000402_150 0.0790695507 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
7 Hb_006588_060 0.0811749706 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
8 Hb_001369_300 0.08282966 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
9 Hb_004109_320 0.0839854509 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
10 Hb_000513_090 0.0842942933 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
11 Hb_001300_280 0.0879032155 - - PREDICTED: mitochondrial substrate carrier family protein ucpB [Jatropha curcas]
12 Hb_171900_090 0.0882107672 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002272_050 0.0923823909 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
14 Hb_164390_010 0.0933809964 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
15 Hb_018790_020 0.0936490119 - - protein kinase, putative [Ricinus communis]
16 Hb_002110_160 0.093990214 - - PREDICTED: phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic [Jatropha curcas]
17 Hb_000176_020 0.0956438533 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
18 Hb_000359_040 0.095737307 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002909_040 0.0957772456 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]
20 Hb_001366_090 0.0966902964 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]

Gene co-expression network

sample Hb_001357_310 Hb_001357_310 Hb_010775_030 Hb_010775_030 Hb_001357_310--Hb_010775_030 Hb_007257_060 Hb_007257_060 Hb_001357_310--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_001357_310--Hb_002014_010 Hb_012092_050 Hb_012092_050 Hb_001357_310--Hb_012092_050 Hb_000402_150 Hb_000402_150 Hb_001357_310--Hb_000402_150 Hb_006588_060 Hb_006588_060 Hb_001357_310--Hb_006588_060 Hb_002110_160 Hb_002110_160 Hb_010775_030--Hb_002110_160 Hb_010775_030--Hb_002014_010 Hb_010775_030--Hb_006588_060 Hb_000086_420 Hb_000086_420 Hb_010775_030--Hb_000086_420 Hb_171900_090 Hb_171900_090 Hb_010775_030--Hb_171900_090 Hb_007257_060--Hb_012092_050 Hb_001300_280 Hb_001300_280 Hb_007257_060--Hb_001300_280 Hb_000008_420 Hb_000008_420 Hb_007257_060--Hb_000008_420 Hb_007257_060--Hb_006588_060 Hb_007257_060--Hb_000402_150 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_007248_030 Hb_007248_030 Hb_002014_010--Hb_007248_030 Hb_004109_320 Hb_004109_320 Hb_002014_010--Hb_004109_320 Hb_002014_010--Hb_171900_090 Hb_000702_090 Hb_000702_090 Hb_002014_010--Hb_000702_090 Hb_000365_230 Hb_000365_230 Hb_002014_010--Hb_000365_230 Hb_012092_050--Hb_002014_010 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_012092_050--Hb_006588_060 Hb_012092_050--Hb_004109_320 Hb_008114_040 Hb_008114_040 Hb_000402_150--Hb_008114_040 Hb_000684_510 Hb_000684_510 Hb_000402_150--Hb_000684_510 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_000402_150--Hb_012092_050 Hb_000402_150--Hb_006588_060 Hb_006588_060--Hb_001300_280 Hb_006588_060--Hb_008114_040 Hb_006588_060--Hb_000008_420 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.0643 21.1013 30.8295 21.4763 12.39 8.91691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.081 19.0102 12.8677 23.9099 10.6316

CAGE analysis