Hb_001357_350

Information

Type -
Description -
Location Contig1357: 249280-255109
Sequence    

Annotation

kegg
ID rcu:RCOM_1303140
description hypothetical protein
nr
ID XP_002529914.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P69735
description Rab3 GTPase-activating protein catalytic subunit (Fragments) OS=Rattus norvegicus GN=Rab3gap1 PE=1 SV=2
trembl
ID B9SV95
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1303140 PE=4 SV=1
Gene Ontology
ID GO:0005096
description rab3 gtpase-activating protein catalytic subunit isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_350 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000417_130 0.0544806767 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
3 Hb_001142_030 0.0582036913 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
4 Hb_003964_070 0.0595048929 - - hypothetical protein JCGZ_15695 [Jatropha curcas]
5 Hb_001268_240 0.0626198919 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
6 Hb_000883_020 0.0635878909 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
7 Hb_000215_110 0.0669728302 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
8 Hb_006455_120 0.0675519906 - - n6-DNA-methyltransferase, putative [Ricinus communis]
9 Hb_010381_090 0.0676842856 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
10 Hb_000640_170 0.0682576518 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
11 Hb_002303_070 0.0690902371 - - PREDICTED: uncharacterized RNA-binding protein C1827.05c [Jatropha curcas]
12 Hb_005357_080 0.0691253743 - - PREDICTED: tyrosyl-DNA phosphodiesterase 1 [Jatropha curcas]
13 Hb_063716_100 0.0704809435 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
14 Hb_000035_470 0.0715207833 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
15 Hb_000345_380 0.071696697 - - PREDICTED: long chain acyl-CoA synthetase 7, peroxisomal [Jatropha curcas]
16 Hb_003226_140 0.0719746938 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
17 Hb_001599_040 0.0722079338 - - PREDICTED: suppressor protein SRP40 isoform X2 [Jatropha curcas]
18 Hb_000230_560 0.0724213888 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
19 Hb_002013_020 0.072453171 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
20 Hb_002235_250 0.0727044696 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001357_350 Hb_001357_350 Hb_000417_130 Hb_000417_130 Hb_001357_350--Hb_000417_130 Hb_001142_030 Hb_001142_030 Hb_001357_350--Hb_001142_030 Hb_003964_070 Hb_003964_070 Hb_001357_350--Hb_003964_070 Hb_001268_240 Hb_001268_240 Hb_001357_350--Hb_001268_240 Hb_000883_020 Hb_000883_020 Hb_001357_350--Hb_000883_020 Hb_000215_110 Hb_000215_110 Hb_001357_350--Hb_000215_110 Hb_123915_040 Hb_123915_040 Hb_000417_130--Hb_123915_040 Hb_001357_250 Hb_001357_250 Hb_000417_130--Hb_001357_250 Hb_000417_130--Hb_001268_240 Hb_000035_470 Hb_000035_470 Hb_000417_130--Hb_000035_470 Hb_063716_100 Hb_063716_100 Hb_000417_130--Hb_063716_100 Hb_002740_030 Hb_002740_030 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_008453_140 Hb_008453_140 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180 Hb_120410_010 Hb_120410_010 Hb_001142_030--Hb_120410_010 Hb_003665_060 Hb_003665_060 Hb_003964_070--Hb_003665_060 Hb_007317_110 Hb_007317_110 Hb_003964_070--Hb_007317_110 Hb_000120_670 Hb_000120_670 Hb_003964_070--Hb_000120_670 Hb_000345_240 Hb_000345_240 Hb_003964_070--Hb_000345_240 Hb_010381_090 Hb_010381_090 Hb_003964_070--Hb_010381_090 Hb_000640_170 Hb_000640_170 Hb_001268_240--Hb_000640_170 Hb_001318_280 Hb_001318_280 Hb_001268_240--Hb_001318_280 Hb_009898_050 Hb_009898_050 Hb_001268_240--Hb_009898_050 Hb_172632_100 Hb_172632_100 Hb_001268_240--Hb_172632_100 Hb_009545_080 Hb_009545_080 Hb_000883_020--Hb_009545_080 Hb_002997_080 Hb_002997_080 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000230_560 Hb_000230_560 Hb_000883_020--Hb_000230_560 Hb_032986_010 Hb_032986_010 Hb_000883_020--Hb_032986_010 Hb_002303_070 Hb_002303_070 Hb_000215_110--Hb_002303_070 Hb_000373_070 Hb_000373_070 Hb_000215_110--Hb_000373_070 Hb_003226_140 Hb_003226_140 Hb_000215_110--Hb_003226_140 Hb_001279_150 Hb_001279_150 Hb_000215_110--Hb_001279_150 Hb_000331_260 Hb_000331_260 Hb_000215_110--Hb_000331_260 Hb_000215_110--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.94742 3.12935 6.20302 5.30437 4.98083 6.35067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.03483 5.97949 4.87981 4.94977 4.09596

CAGE analysis