Hb_001357_360

Information

Type -
Description -
Location Contig1357: 257958-260617
Sequence    

Annotation

kegg
ID rcu:RCOM_1302870
description zinc finger protein, putative
nr
ID XP_002529910.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9FIA1
description GDSL esterase/lipase At5g55050 OS=Arabidopsis thaliana GN=At5g55050 PE=2 SV=1
trembl
ID B9SV91
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1302870 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at5g55050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_360 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_001971_020 0.0794574847 - - PREDICTED: alpha-dioxygenase 2 [Populus euphratica]
3 Hb_003077_140 0.0945978735 - - hypothetical protein JCGZ_16294 [Jatropha curcas]
4 Hb_000767_010 0.0989039114 - - PREDICTED: geraniol 8-hydroxylase-like isoform X2 [Solanum lycopersicum]
5 Hb_005470_040 0.100470394 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
6 Hb_123560_050 0.1010852344 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
7 Hb_004007_230 0.109728686 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
8 Hb_005306_020 0.1109670545 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
9 Hb_000377_160 0.1136664585 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
10 Hb_008111_010 0.1137321344 - - hypothetical protein VITISV_021527 [Vitis vinifera]
11 Hb_000264_340 0.1140777042 - - PREDICTED: callose synthase 11-like isoform X1 [Jatropha curcas]
12 Hb_000614_190 0.1155646122 desease resistance Gene Name: ABC_membrane PREDICTED: putative ABC transporter C family member 15 [Jatropha curcas]
13 Hb_026144_030 0.1163259501 - - PREDICTED: high affinity nitrate transporter 2.5 [Jatropha curcas]
14 Hb_000563_120 0.121914458 - - hypothetical protein JCGZ_18936 [Jatropha curcas]
15 Hb_028872_100 0.1319140705 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
16 Hb_114310_050 0.1325330443 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
17 Hb_001819_010 0.1332077797 - - PREDICTED: potassium transporter 8 [Jatropha curcas]
18 Hb_005054_280 0.1350431086 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
19 Hb_026053_030 0.1364961345 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
20 Hb_001085_230 0.1372546726 - - PREDICTED: receptor like protein kinase S.2 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_360 Hb_001357_360 Hb_001971_020 Hb_001971_020 Hb_001357_360--Hb_001971_020 Hb_003077_140 Hb_003077_140 Hb_001357_360--Hb_003077_140 Hb_000767_010 Hb_000767_010 Hb_001357_360--Hb_000767_010 Hb_005470_040 Hb_005470_040 Hb_001357_360--Hb_005470_040 Hb_123560_050 Hb_123560_050 Hb_001357_360--Hb_123560_050 Hb_004007_230 Hb_004007_230 Hb_001357_360--Hb_004007_230 Hb_000563_120 Hb_000563_120 Hb_001971_020--Hb_000563_120 Hb_008111_010 Hb_008111_010 Hb_001971_020--Hb_008111_010 Hb_005306_020 Hb_005306_020 Hb_001971_020--Hb_005306_020 Hb_000264_340 Hb_000264_340 Hb_001971_020--Hb_000264_340 Hb_007320_020 Hb_007320_020 Hb_001971_020--Hb_007320_020 Hb_003077_140--Hb_000767_010 Hb_001153_090 Hb_001153_090 Hb_003077_140--Hb_001153_090 Hb_033153_040 Hb_033153_040 Hb_003077_140--Hb_033153_040 Hb_003077_140--Hb_123560_050 Hb_002818_070 Hb_002818_070 Hb_003077_140--Hb_002818_070 Hb_026144_030 Hb_026144_030 Hb_000767_010--Hb_026144_030 Hb_028872_100 Hb_028872_100 Hb_000767_010--Hb_028872_100 Hb_000767_010--Hb_008111_010 Hb_000767_010--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_005470_040--Hb_031949_010 Hb_005470_040--Hb_000264_340 Hb_000377_160 Hb_000377_160 Hb_005470_040--Hb_000377_160 Hb_109489_010 Hb_109489_010 Hb_005470_040--Hb_109489_010 Hb_005470_040--Hb_123560_050 Hb_001819_010 Hb_001819_010 Hb_123560_050--Hb_001819_010 Hb_123560_050--Hb_000377_160 Hb_029866_110 Hb_029866_110 Hb_123560_050--Hb_029866_110 Hb_007420_020 Hb_007420_020 Hb_123560_050--Hb_007420_020 Hb_123560_050--Hb_026144_030 Hb_026053_030 Hb_026053_030 Hb_004007_230--Hb_026053_030 Hb_004143_140 Hb_004143_140 Hb_004007_230--Hb_004143_140 Hb_000044_050 Hb_000044_050 Hb_004007_230--Hb_000044_050 Hb_004007_230--Hb_003077_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0342756 2.91782 0.696301 1.21738 0 0.0507527
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0307786 0 1.82377 2.87118

CAGE analysis