Hb_001357_370

Information

Type -
Description -
Location Contig1357: 261948-263702
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_370 0.0 - - -
2 Hb_004968_110 0.006194185 - - hypothetical protein JCGZ_01361 [Jatropha curcas]
3 Hb_000023_040 0.0079306824 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_007227_010 0.0174667931 - - hypothetical protein BN927_00890 [Lactococcus lactis subsp. lactis Dephy 1]
5 Hb_005714_080 0.0218441741 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105109431 [Populus euphratica]
6 Hb_052135_010 0.0236201701 - - PREDICTED: phytochrome B isoform X2 [Jatropha curcas]
7 Hb_170365_010 0.0237200828 - - Retrotransposon protein, putative [Theobroma cacao]
8 Hb_183433_020 0.024321282 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
9 Hb_181803_010 0.0255287056 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
10 Hb_004000_030 0.0256024952 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_185830_040 0.0267682741 - - hypothetical protein JCGZ_16423 [Jatropha curcas]
12 Hb_002793_010 0.0272149377 - - putative metal-nicotianamine transporter YSL7 -like protein [Gossypium arboreum]
13 Hb_000856_220 0.0276348452 - - hypothetical protein POPTR_0012s07300g [Populus trichocarpa]
14 Hb_004607_010 0.0298101891 - - -
15 Hb_007289_010 0.0349341581 - - cytochrome P450, putative [Ricinus communis]
16 Hb_008021_020 0.0350862735 transcription factor TF Family: GRF hypothetical protein POPTR_0014s00780g [Populus trichocarpa]
17 Hb_000283_170 0.0353998283 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000319_100 0.0437834216 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
19 Hb_001587_130 0.0441173411 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
20 Hb_000156_020 0.045184653 - - PREDICTED: la-related protein 6A [Jatropha curcas]

Gene co-expression network

sample Hb_001357_370 Hb_001357_370 Hb_004968_110 Hb_004968_110 Hb_001357_370--Hb_004968_110 Hb_000023_040 Hb_000023_040 Hb_001357_370--Hb_000023_040 Hb_007227_010 Hb_007227_010 Hb_001357_370--Hb_007227_010 Hb_005714_080 Hb_005714_080 Hb_001357_370--Hb_005714_080 Hb_052135_010 Hb_052135_010 Hb_001357_370--Hb_052135_010 Hb_170365_010 Hb_170365_010 Hb_001357_370--Hb_170365_010 Hb_004968_110--Hb_000023_040 Hb_004968_110--Hb_007227_010 Hb_004968_110--Hb_005714_080 Hb_004968_110--Hb_052135_010 Hb_004968_110--Hb_170365_010 Hb_000023_040--Hb_007227_010 Hb_000023_040--Hb_005714_080 Hb_000023_040--Hb_052135_010 Hb_000023_040--Hb_170365_010 Hb_007227_010--Hb_005714_080 Hb_007227_010--Hb_052135_010 Hb_007227_010--Hb_170365_010 Hb_183433_020 Hb_183433_020 Hb_007227_010--Hb_183433_020 Hb_181803_010 Hb_181803_010 Hb_007227_010--Hb_181803_010 Hb_004000_030 Hb_004000_030 Hb_007227_010--Hb_004000_030 Hb_005714_080--Hb_052135_010 Hb_005714_080--Hb_170365_010 Hb_005714_080--Hb_183433_020 Hb_005714_080--Hb_181803_010 Hb_005714_080--Hb_004000_030 Hb_052135_010--Hb_170365_010 Hb_052135_010--Hb_183433_020 Hb_052135_010--Hb_181803_010 Hb_052135_010--Hb_004000_030 Hb_185830_040 Hb_185830_040 Hb_052135_010--Hb_185830_040 Hb_170365_010--Hb_183433_020 Hb_170365_010--Hb_181803_010 Hb_170365_010--Hb_004000_030 Hb_170365_010--Hb_185830_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.240495 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.255087 0

CAGE analysis