Hb_001357_380

Information

Type -
Description -
Location Contig1357: 263945-267629
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44470g
description tetraacyldisaccharide 4'-kinase family protein
nr
ID XP_012070850.1
description PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
swissprot
ID Q8LEA0
description Probable tetraacyldisaccharide 4'-kinase, mitochondrial OS=Arabidopsis thaliana GN=LPXK PE=2 SV=1
trembl
ID A0A067KSM8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00904 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable tetraacyldisaccharide 4 - mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09945: 264081-265826 , PASA_asmbl_09946: 265908-267544 , PASA_asmbl_09947: 265908-267544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001357_380 0.0 - - PREDICTED: probable tetraacyldisaccharide 4'-kinase, mitochondrial isoform X1 [Jatropha curcas]
2 Hb_000211_110 0.0603044155 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
3 Hb_000059_140 0.0673590523 - - rnase h, putative [Ricinus communis]
4 Hb_011942_080 0.0706709607 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
5 Hb_000106_130 0.0710614811 - - unnamed protein product [Vitis vinifera]
6 Hb_001486_340 0.0731557086 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
7 Hb_001894_030 0.0733525537 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
8 Hb_000368_020 0.075337396 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
9 Hb_003467_010 0.0756736235 - - PREDICTED: probable thiol methyltransferase 2 [Jatropha curcas]
10 Hb_009222_010 0.0785837622 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_004450_060 0.0794153954 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
12 Hb_031939_010 0.0804808023 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_003029_030 0.0823837295 - - PREDICTED: uncharacterized protein LOC105642632 isoform X2 [Jatropha curcas]
14 Hb_000785_030 0.0836290943 - - hypothetical protein RCOM_0808030 [Ricinus communis]
15 Hb_003849_060 0.084344642 - - PREDICTED: pentatricopeptide repeat-containing protein At1g13040, mitochondrial [Jatropha curcas]
16 Hb_009252_100 0.0858682017 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
17 Hb_007632_110 0.0862778396 - - chromatin regulatory protein sir2, putative [Ricinus communis]
18 Hb_007336_020 0.0872156945 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
19 Hb_011609_080 0.0880575808 - - uv excision repair protein rad23, putative [Ricinus communis]
20 Hb_000334_270 0.0886995772 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001357_380 Hb_001357_380 Hb_000211_110 Hb_000211_110 Hb_001357_380--Hb_000211_110 Hb_000059_140 Hb_000059_140 Hb_001357_380--Hb_000059_140 Hb_011942_080 Hb_011942_080 Hb_001357_380--Hb_011942_080 Hb_000106_130 Hb_000106_130 Hb_001357_380--Hb_000106_130 Hb_001486_340 Hb_001486_340 Hb_001357_380--Hb_001486_340 Hb_001894_030 Hb_001894_030 Hb_001357_380--Hb_001894_030 Hb_000211_110--Hb_001894_030 Hb_000920_280 Hb_000920_280 Hb_000211_110--Hb_000920_280 Hb_000640_020 Hb_000640_020 Hb_000211_110--Hb_000640_020 Hb_011848_010 Hb_011848_010 Hb_000211_110--Hb_011848_010 Hb_000211_110--Hb_000059_140 Hb_032278_020 Hb_032278_020 Hb_000059_140--Hb_032278_020 Hb_000334_270 Hb_000334_270 Hb_000059_140--Hb_000334_270 Hb_007520_030 Hb_007520_030 Hb_000059_140--Hb_007520_030 Hb_009222_010 Hb_009222_010 Hb_000059_140--Hb_009222_010 Hb_000059_140--Hb_001486_340 Hb_031939_010 Hb_031939_010 Hb_011942_080--Hb_031939_010 Hb_003467_010 Hb_003467_010 Hb_011942_080--Hb_003467_010 Hb_007336_020 Hb_007336_020 Hb_011942_080--Hb_007336_020 Hb_000976_320 Hb_000976_320 Hb_011942_080--Hb_000976_320 Hb_012799_110 Hb_012799_110 Hb_011942_080--Hb_012799_110 Hb_000313_300 Hb_000313_300 Hb_000106_130--Hb_000313_300 Hb_000106_130--Hb_000211_110 Hb_000785_030 Hb_000785_030 Hb_000106_130--Hb_000785_030 Hb_000106_130--Hb_001894_030 Hb_000174_110 Hb_000174_110 Hb_000106_130--Hb_000174_110 Hb_000538_100 Hb_000538_100 Hb_001486_340--Hb_000538_100 Hb_000179_030 Hb_000179_030 Hb_001486_340--Hb_000179_030 Hb_006355_010 Hb_006355_010 Hb_001486_340--Hb_006355_010 Hb_000308_030 Hb_000308_030 Hb_001486_340--Hb_000308_030 Hb_001486_340--Hb_000174_110 Hb_006620_020 Hb_006620_020 Hb_001486_340--Hb_006620_020 Hb_000617_220 Hb_000617_220 Hb_001894_030--Hb_000617_220 Hb_001894_030--Hb_000640_020 Hb_001894_030--Hb_011848_010 Hb_004701_030 Hb_004701_030 Hb_001894_030--Hb_004701_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3733 6.09772 6.48639 4.12175 11.8671 10.0563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24172 5.54308 2.95843 4.06147 2.33759

CAGE analysis