Hb_001358_120

Information

Type transcription factor
Description TF Family: MYB
Location Contig1358: 317127-318494
Sequence    

Annotation

kegg
ID pop:POPTR_0006s23840g
description POPTRDRAFT_819461; hypothetical protein
nr
ID XP_011019362.1
description PREDICTED: myb-related protein 308-like [Populus euphratica]
swissprot
ID P10290
description Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
trembl
ID B5UAQ2
description Transcription factor MYB251 OS=Fagus crenata GN=FcMYB251 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb-related protein 308-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09963: 317968-318483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001358_120 0.0 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
2 Hb_009150_060 0.0986041472 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
3 Hb_003842_010 0.106784452 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_001300_140 0.1075523284 - - -
5 Hb_011440_010 0.1080539335 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
6 Hb_002304_190 0.1091237157 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
7 Hb_002475_030 0.1115064824 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002685_100 0.1122013764 - - low temperature inducible SLTI66 [Glycine max]
9 Hb_000836_260 0.1143609551 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
10 Hb_004586_110 0.1250339947 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
11 Hb_000753_180 0.1295037671 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
12 Hb_000336_280 0.1296731819 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
13 Hb_001345_010 0.1327338371 - - hypothetical protein MIMGU_mgv1a010889mg [Erythranthe guttata]
14 Hb_123560_020 0.1330987435 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
15 Hb_005333_210 0.1336923289 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
16 Hb_005168_030 0.1354765159 - - unknown [Zea mays]
17 Hb_000017_320 0.1401990589 transcription factor TF Family: bHLH PREDICTED: transcription factor GLABRA 3-like isoform X1 [Jatropha curcas]
18 Hb_000471_010 0.1417058387 - - ATP binding protein, putative [Ricinus communis]
19 Hb_009486_120 0.1424154144 - - hypothetical protein PRUPE_ppa004149mg [Prunus persica]
20 Hb_000215_130 0.1425227205 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]

Gene co-expression network

sample Hb_001358_120 Hb_001358_120 Hb_009150_060 Hb_009150_060 Hb_001358_120--Hb_009150_060 Hb_003842_010 Hb_003842_010 Hb_001358_120--Hb_003842_010 Hb_001300_140 Hb_001300_140 Hb_001358_120--Hb_001300_140 Hb_011440_010 Hb_011440_010 Hb_001358_120--Hb_011440_010 Hb_002304_190 Hb_002304_190 Hb_001358_120--Hb_002304_190 Hb_002475_030 Hb_002475_030 Hb_001358_120--Hb_002475_030 Hb_009150_060--Hb_001300_140 Hb_004010_090 Hb_004010_090 Hb_009150_060--Hb_004010_090 Hb_000836_260 Hb_000836_260 Hb_009150_060--Hb_000836_260 Hb_004128_090 Hb_004128_090 Hb_009150_060--Hb_004128_090 Hb_009150_060--Hb_011440_010 Hb_010839_010 Hb_010839_010 Hb_009150_060--Hb_010839_010 Hb_001345_010 Hb_001345_010 Hb_003842_010--Hb_001345_010 Hb_005276_220 Hb_005276_220 Hb_003842_010--Hb_005276_220 Hb_003842_010--Hb_002475_030 Hb_000203_080 Hb_000203_080 Hb_003842_010--Hb_000203_080 Hb_003085_080 Hb_003085_080 Hb_003842_010--Hb_003085_080 Hb_003842_010--Hb_009150_060 Hb_001300_140--Hb_011440_010 Hb_001300_140--Hb_000836_260 Hb_000753_180 Hb_000753_180 Hb_001300_140--Hb_000753_180 Hb_005333_210 Hb_005333_210 Hb_001300_140--Hb_005333_210 Hb_000844_090 Hb_000844_090 Hb_001300_140--Hb_000844_090 Hb_123560_020 Hb_123560_020 Hb_011440_010--Hb_123560_020 Hb_005168_030 Hb_005168_030 Hb_011440_010--Hb_005168_030 Hb_011440_010--Hb_000753_180 Hb_002685_100 Hb_002685_100 Hb_002304_190--Hb_002685_100 Hb_001832_110 Hb_001832_110 Hb_002304_190--Hb_001832_110 Hb_033312_050 Hb_033312_050 Hb_002304_190--Hb_033312_050 Hb_000336_280 Hb_000336_280 Hb_002304_190--Hb_000336_280 Hb_000017_320 Hb_000017_320 Hb_002304_190--Hb_000017_320 Hb_009486_120 Hb_009486_120 Hb_002304_190--Hb_009486_120 Hb_002475_030--Hb_004128_090 Hb_002475_030--Hb_004010_090 Hb_002475_030--Hb_009150_060 Hb_002475_030--Hb_003085_080 Hb_002475_030--Hb_010839_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.347819 2.13825 6.01074 2.91598 0.0173983 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.042432 0 0 11.3194 4.20456

CAGE analysis