Hb_001359_050

Information

Type -
Description -
Location Contig1359: 67093-71095
Sequence    

Annotation

kegg
ID rcu:RCOM_0804290
description hypothetical protein
nr
ID XP_002516605.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS86
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0804290 PE=4 SV=1
Gene Ontology
ID GO:0006810
description mitochondrial glycoprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09973: 67181-71014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001359_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_024958_010 0.048644547 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
3 Hb_008725_230 0.0502660796 - - PREDICTED: CTP synthase [Jatropha curcas]
4 Hb_001221_110 0.0519743069 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
5 Hb_006570_080 0.0520677219 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
6 Hb_003464_090 0.05454754 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
7 Hb_000173_280 0.0555118108 - - Speckle-type POZ protein, putative [Ricinus communis]
8 Hb_000484_130 0.0575963089 - - splicing factor, putative [Ricinus communis]
9 Hb_002936_010 0.0580997971 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
10 Hb_164390_010 0.0595129948 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
11 Hb_093458_040 0.0603374123 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
12 Hb_003849_110 0.0604914092 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
13 Hb_000331_550 0.0643835313 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
14 Hb_006831_140 0.0651337098 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
15 Hb_002232_410 0.0651777929 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
16 Hb_000392_420 0.0672106179 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
17 Hb_000684_380 0.0674519891 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_001408_140 0.0680964439 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
19 Hb_002205_110 0.0682126894 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003001_080 0.0706943812 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]

Gene co-expression network

sample Hb_001359_050 Hb_001359_050 Hb_024958_010 Hb_024958_010 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_006570_080 Hb_006570_080 Hb_001359_050--Hb_006570_080 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_000173_280 Hb_000173_280 Hb_001359_050--Hb_000173_280 Hb_002936_010 Hb_002936_010 Hb_024958_010--Hb_002936_010 Hb_000684_380 Hb_000684_380 Hb_024958_010--Hb_000684_380 Hb_002320_040 Hb_002320_040 Hb_024958_010--Hb_002320_040 Hb_024958_010--Hb_008725_230 Hb_024958_010--Hb_006570_080 Hb_002232_410 Hb_002232_410 Hb_008725_230--Hb_002232_410 Hb_001205_240 Hb_001205_240 Hb_008725_230--Hb_001205_240 Hb_004324_130 Hb_004324_130 Hb_008725_230--Hb_004324_130 Hb_000185_030 Hb_000185_030 Hb_008725_230--Hb_000185_030 Hb_000028_370 Hb_000028_370 Hb_008725_230--Hb_000028_370 Hb_000649_110 Hb_000649_110 Hb_001221_110--Hb_000649_110 Hb_000484_130 Hb_000484_130 Hb_001221_110--Hb_000484_130 Hb_001221_110--Hb_000173_280 Hb_164390_010 Hb_164390_010 Hb_001221_110--Hb_164390_010 Hb_001221_110--Hb_024958_010 Hb_006570_080--Hb_002936_010 Hb_005588_060 Hb_005588_060 Hb_006570_080--Hb_005588_060 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_000173_280--Hb_164390_010 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_000173_280--Hb_005588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8427 25.8471 23.9179 22.7406 18.1071 17.7197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.6907 27.3514 20.5417 24.5548 16.0111

CAGE analysis