Hb_001360_040

Information

Type -
Description -
Location Contig1360: 66594-73068
Sequence    

Annotation

kegg
ID rcu:RCOM_1354120
description protein binding protein, putative
nr
ID XP_012082442.1
description PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
swissprot
ID Q6PCD5
description E3 ubiquitin-protein ligase RFWD3 OS=Homo sapiens GN=RFWD3 PE=1 SV=3
trembl
ID A0A067K298
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16562 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase rfwd3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10020: 66669-73145 , PASA_asmbl_10021: 67829-68055 , PASA_asmbl_10022: 70036-71727 , PASA_asmbl_10023: 69142-69507 , PASA_asmbl_10024: 68156-68765
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
2 Hb_001396_180 0.0682819549 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
3 Hb_003732_020 0.0812390338 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]
4 Hb_000761_020 0.088592708 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
5 Hb_003376_040 0.0894512417 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
6 Hb_002685_140 0.0899701396 - - PREDICTED: membrin-11 [Jatropha curcas]
7 Hb_000436_070 0.0918919751 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
8 Hb_002188_130 0.0928582782 - - PREDICTED: uncharacterized protein LOC105650815 isoform X2 [Jatropha curcas]
9 Hb_000264_240 0.0937656276 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001439_150 0.0968420907 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
11 Hb_000175_440 0.1005425867 - - signal peptidase family protein [Populus trichocarpa]
12 Hb_003016_020 0.1015929677 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
13 Hb_003929_160 0.1024498516 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
14 Hb_000123_120 0.1027460424 - - actin depolymerizing factor 4 [Hevea brasiliensis]
15 Hb_004324_070 0.1051237952 - - protein phosphatase 2C [Hevea brasiliensis]
16 Hb_000120_950 0.105186359 - - PREDICTED: protein GRIP [Jatropha curcas]
17 Hb_001269_680 0.105243656 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
18 Hb_000620_010 0.1057603143 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
19 Hb_000096_090 0.1060411876 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
20 Hb_000001_020 0.1079326616 - - PREDICTED: homogentisate solanesyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001360_040 Hb_001360_040 Hb_001396_180 Hb_001396_180 Hb_001360_040--Hb_001396_180 Hb_003732_020 Hb_003732_020 Hb_001360_040--Hb_003732_020 Hb_000761_020 Hb_000761_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_002685_140 Hb_002685_140 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_001396_180--Hb_003376_040 Hb_005539_350 Hb_005539_350 Hb_001396_180--Hb_005539_350 Hb_001269_680 Hb_001269_680 Hb_001396_180--Hb_001269_680 Hb_153112_020 Hb_153112_020 Hb_001396_180--Hb_153112_020 Hb_000096_090 Hb_000096_090 Hb_001396_180--Hb_000096_090 Hb_000264_240 Hb_000264_240 Hb_003732_020--Hb_000264_240 Hb_000175_440 Hb_000175_440 Hb_003732_020--Hb_000175_440 Hb_003732_020--Hb_002685_140 Hb_000787_050 Hb_000787_050 Hb_003732_020--Hb_000787_050 Hb_001135_050 Hb_001135_050 Hb_003732_020--Hb_001135_050 Hb_000620_010 Hb_000620_010 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040 Hb_003929_160 Hb_003929_160 Hb_003376_040--Hb_003929_160 Hb_007380_070 Hb_007380_070 Hb_003376_040--Hb_007380_070 Hb_007908_020 Hb_007908_020 Hb_003376_040--Hb_007908_020 Hb_001862_190 Hb_001862_190 Hb_003376_040--Hb_001862_190 Hb_003376_040--Hb_000096_090 Hb_000327_120 Hb_000327_120 Hb_002685_140--Hb_000327_120 Hb_001439_150 Hb_001439_150 Hb_002685_140--Hb_001439_150 Hb_011689_080 Hb_011689_080 Hb_002685_140--Hb_011689_080 Hb_001623_420 Hb_001623_420 Hb_002685_140--Hb_001623_420 Hb_001635_170 Hb_001635_170 Hb_002685_140--Hb_001635_170 Hb_007576_040 Hb_007576_040 Hb_002685_140--Hb_007576_040 Hb_000120_950 Hb_000120_950 Hb_000436_070--Hb_000120_950 Hb_001051_100 Hb_001051_100 Hb_000436_070--Hb_001051_100 Hb_002027_130 Hb_002027_130 Hb_000436_070--Hb_002027_130 Hb_000436_070--Hb_000620_010 Hb_000436_070--Hb_007908_020 Hb_001248_130 Hb_001248_130 Hb_000436_070--Hb_001248_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2084 3.41465 8.68519 4.85387 11.1895 10.9744
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8091 9.09065 15.7202 2.90391 3.5573

CAGE analysis