Hb_001360_050

Information

Type -
Description -
Location Contig1360: 73883-92295
Sequence    

Annotation

kegg
ID rcu:RCOM_1354100
description hypothetical protein
nr
ID XP_012082443.1
description PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
swissprot
ID B6SFA4
description Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2 SV=1
trembl
ID B9S0F4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1354100 PE=4 SV=1
Gene Ontology
ID GO:0004386
description p-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10025: 74264-75448 , PASA_asmbl_10027: 76447-81667 , PASA_asmbl_10028: 78304-90469 , PASA_asmbl_10030: 90487-91551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001360_050 0.0 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
2 Hb_004724_340 0.0417096685 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
3 Hb_001833_110 0.0630067793 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002471_080 0.0688245887 - - oxidoreductase, putative [Ricinus communis]
5 Hb_005092_060 0.0694516771 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_002759_060 0.0701156186 - - PREDICTED: protein LSM12 homolog A-like [Jatropha curcas]
7 Hb_012675_060 0.0701897063 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
8 Hb_004678_050 0.0711473689 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
9 Hb_001083_020 0.0717635624 - - -
10 Hb_010080_090 0.0747481262 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
11 Hb_000046_290 0.0776042579 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
12 Hb_024185_020 0.0785478549 - - -
13 Hb_001832_010 0.0793739503 - - PREDICTED: uncharacterized protein LOC105637890 isoform X1 [Jatropha curcas]
14 Hb_004218_110 0.0806787581 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
15 Hb_020000_010 0.0806866805 - - PREDICTED: KH domain-containing protein At5g56140 [Vitis vinifera]
16 Hb_001775_110 0.08107723 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
17 Hb_027073_040 0.0818133134 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
18 Hb_009393_210 0.0824332761 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
19 Hb_015807_040 0.0834447943 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
20 Hb_000230_510 0.0838754473 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]

Gene co-expression network

sample Hb_001360_050 Hb_001360_050 Hb_004724_340 Hb_004724_340 Hb_001360_050--Hb_004724_340 Hb_001833_110 Hb_001833_110 Hb_001360_050--Hb_001833_110 Hb_002471_080 Hb_002471_080 Hb_001360_050--Hb_002471_080 Hb_005092_060 Hb_005092_060 Hb_001360_050--Hb_005092_060 Hb_002759_060 Hb_002759_060 Hb_001360_050--Hb_002759_060 Hb_012675_060 Hb_012675_060 Hb_001360_050--Hb_012675_060 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_004724_340--Hb_012675_060 Hb_004724_340--Hb_001833_110 Hb_000347_410 Hb_000347_410 Hb_004724_340--Hb_000347_410 Hb_004724_340--Hb_002471_080 Hb_001833_110--Hb_002759_060 Hb_015807_040 Hb_015807_040 Hb_001833_110--Hb_015807_040 Hb_001832_010 Hb_001832_010 Hb_001833_110--Hb_001832_010 Hb_000041_050 Hb_000041_050 Hb_001833_110--Hb_000041_050 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_124755_010 Hb_124755_010 Hb_002471_080--Hb_124755_010 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_000024_030 Hb_000024_030 Hb_002471_080--Hb_000024_030 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_005092_060--Hb_001833_110 Hb_002759_060--Hb_004218_110 Hb_027073_040 Hb_027073_040 Hb_002759_060--Hb_027073_040 Hb_003996_020 Hb_003996_020 Hb_002759_060--Hb_003996_020 Hb_025240_040 Hb_025240_040 Hb_002759_060--Hb_025240_040 Hb_000058_060 Hb_000058_060 Hb_002759_060--Hb_000058_060 Hb_012753_160 Hb_012753_160 Hb_012675_060--Hb_012753_160 Hb_012675_060--Hb_010080_090 Hb_000834_270 Hb_000834_270 Hb_012675_060--Hb_000834_270 Hb_004586_320 Hb_004586_320 Hb_012675_060--Hb_004586_320 Hb_000574_480 Hb_000574_480 Hb_012675_060--Hb_000574_480 Hb_000173_220 Hb_000173_220 Hb_012675_060--Hb_000173_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.4821 3.10109 3.03908 5.43039 7.24928 9.70353
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.5055 16.723 15.0416 8.94947 6.30993

CAGE analysis