Hb_001364_040

Information

Type -
Description -
Location Contig1364: 20142-21635
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001364_040 0.0 - - -
2 Hb_000997_330 0.163736338 - - hypothetical protein POPTR_0010s08940g [Populus trichocarpa]
3 Hb_000988_040 0.2169708658 - - -
4 Hb_000193_240 0.219320487 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
5 Hb_000638_020 0.2211760493 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
6 Hb_000832_230 0.2277480338 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
7 Hb_001143_090 0.2374625933 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
8 Hb_143766_100 0.2378747773 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
9 Hb_004453_140 0.2446371986 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
10 Hb_161072_020 0.2476136102 - - -
11 Hb_001258_140 0.24942063 - - -
12 Hb_004942_010 0.249737536 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
13 Hb_004157_120 0.2500067992 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
14 Hb_081504_010 0.253693732 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
15 Hb_002983_030 0.2538920841 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
16 Hb_012395_210 0.2585932867 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000771_130 0.2660912774 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
18 Hb_003060_030 0.2672429765 - - conserved hypothetical protein 16 [Hevea brasiliensis]
19 Hb_000380_020 0.2707209858 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
20 Hb_000972_010 0.2715312186 - - PREDICTED: kinesin KP1 [Jatropha curcas]

Gene co-expression network

sample Hb_001364_040 Hb_001364_040 Hb_000997_330 Hb_000997_330 Hb_001364_040--Hb_000997_330 Hb_000988_040 Hb_000988_040 Hb_001364_040--Hb_000988_040 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_000638_020 Hb_000638_020 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_081504_010 Hb_081504_010 Hb_000997_330--Hb_081504_010 Hb_161072_020 Hb_161072_020 Hb_000997_330--Hb_161072_020 Hb_004157_120 Hb_004157_120 Hb_000997_330--Hb_004157_120 Hb_143766_100 Hb_143766_100 Hb_000997_330--Hb_143766_100 Hb_002400_090 Hb_002400_090 Hb_000997_330--Hb_002400_090 Hb_001798_010 Hb_001798_010 Hb_000988_040--Hb_001798_010 Hb_002890_250 Hb_002890_250 Hb_000988_040--Hb_002890_250 Hb_007576_030 Hb_007576_030 Hb_000988_040--Hb_007576_030 Hb_000988_040--Hb_000638_020 Hb_004942_010 Hb_004942_010 Hb_000988_040--Hb_004942_010 Hb_002983_030 Hb_002983_030 Hb_000193_240--Hb_002983_030 Hb_004453_140 Hb_004453_140 Hb_000193_240--Hb_004453_140 Hb_001268_400 Hb_001268_400 Hb_000193_240--Hb_001268_400 Hb_000749_250 Hb_000749_250 Hb_000193_240--Hb_000749_250 Hb_000193_240--Hb_001143_090 Hb_003060_030 Hb_003060_030 Hb_000193_240--Hb_003060_030 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000638_020--Hb_000832_230 Hb_096225_020 Hb_096225_020 Hb_000832_230--Hb_096225_020 Hb_000832_230--Hb_000380_020 Hb_000832_230--Hb_002983_030 Hb_000832_230--Hb_000193_240 Hb_000832_230--Hb_004453_140 Hb_001143_090--Hb_000749_250 Hb_001143_090--Hb_004453_140 Hb_002392_040 Hb_002392_040 Hb_001143_090--Hb_002392_040 Hb_000363_010 Hb_000363_010 Hb_001143_090--Hb_000363_010 Hb_001278_050 Hb_001278_050 Hb_001143_090--Hb_001278_050 Hb_003943_030 Hb_003943_030 Hb_001143_090--Hb_003943_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.10549 0.0503126
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131196 0.206144 0.350216 0.0427939 0

CAGE analysis