Hb_001365_050

Information

Type -
Description -
Location Contig1365: 136129-158816
Sequence    

Annotation

kegg
ID pop:POPTR_0019s128601
description hypothetical protein
nr
ID XP_006371533.1
description hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
swissprot
ID C0LGD7
description Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=2 SV=2
trembl
ID U5FF41
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0019s128601g PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at1g05700 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001365_050 0.0 - - hypothetical protein POPTR_0019s128601g, partial [Populus trichocarpa]
2 Hb_003106_210 0.0947423011 - - PREDICTED: UDP-glycosyltransferase 74B1-like [Jatropha curcas]
3 Hb_006316_030 0.1222291709 - - aldehyde oxidase, putative [Ricinus communis]
4 Hb_043768_010 0.1376401551 - - PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
5 Hb_000067_030 0.1432244622 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
6 Hb_007919_030 0.1432525163 - - -
7 Hb_000377_160 0.1542495395 - - PREDICTED: oligopeptide transporter 3 [Jatropha curcas]
8 Hb_000720_210 0.1555290225 - - carbonyl reductase, putative [Ricinus communis]
9 Hb_107543_010 0.1580615011 - - Cysteine-rich RLK 10, putative [Theobroma cacao]
10 Hb_001006_280 0.1590370675 - - PREDICTED: glutamate decarboxylase 4 [Jatropha curcas]
11 Hb_002217_200 0.1593168895 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
12 Hb_000527_140 0.1593828807 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
13 Hb_000649_280 0.159895336 - - PREDICTED: F-box protein PP2-B10-like [Pyrus x bretschneideri]
14 Hb_002217_070 0.1623995042 - - PREDICTED: uncharacterized protein LOC105643596 [Jatropha curcas]
15 Hb_002600_010 0.1637889303 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]
16 Hb_003337_050 0.1663011905 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
17 Hb_000037_010 0.16766817 - - PREDICTED: cation/H(+) antiporter 18-like [Jatropha curcas]
18 Hb_006501_170 0.1688595731 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
19 Hb_003767_010 0.1703049832 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
20 Hb_001140_320 0.1705057461 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_001365_050 Hb_001365_050 Hb_003106_210 Hb_003106_210 Hb_001365_050--Hb_003106_210 Hb_006316_030 Hb_006316_030 Hb_001365_050--Hb_006316_030 Hb_043768_010 Hb_043768_010 Hb_001365_050--Hb_043768_010 Hb_000067_030 Hb_000067_030 Hb_001365_050--Hb_000067_030 Hb_007919_030 Hb_007919_030 Hb_001365_050--Hb_007919_030 Hb_000377_160 Hb_000377_160 Hb_001365_050--Hb_000377_160 Hb_003106_210--Hb_006316_030 Hb_002218_070 Hb_002218_070 Hb_003106_210--Hb_002218_070 Hb_006501_170 Hb_006501_170 Hb_003106_210--Hb_006501_170 Hb_003106_210--Hb_000067_030 Hb_107543_010 Hb_107543_010 Hb_003106_210--Hb_107543_010 Hb_038777_010 Hb_038777_010 Hb_006316_030--Hb_038777_010 Hb_001862_060 Hb_001862_060 Hb_006316_030--Hb_001862_060 Hb_001894_040 Hb_001894_040 Hb_006316_030--Hb_001894_040 Hb_001636_010 Hb_001636_010 Hb_006316_030--Hb_001636_010 Hb_001085_230 Hb_001085_230 Hb_006316_030--Hb_001085_230 Hb_002217_200 Hb_002217_200 Hb_043768_010--Hb_002217_200 Hb_001006_280 Hb_001006_280 Hb_043768_010--Hb_001006_280 Hb_000034_030 Hb_000034_030 Hb_043768_010--Hb_000034_030 Hb_043768_010--Hb_003106_210 Hb_003767_010 Hb_003767_010 Hb_043768_010--Hb_003767_010 Hb_003142_090 Hb_003142_090 Hb_000067_030--Hb_003142_090 Hb_000067_030--Hb_006501_170 Hb_006718_040 Hb_006718_040 Hb_000067_030--Hb_006718_040 Hb_001140_320 Hb_001140_320 Hb_000067_030--Hb_001140_320 Hb_000163_250 Hb_000163_250 Hb_007919_030--Hb_000163_250 Hb_001675_130 Hb_001675_130 Hb_007919_030--Hb_001675_130 Hb_007919_030--Hb_001085_230 Hb_001946_060 Hb_001946_060 Hb_007919_030--Hb_001946_060 Hb_007919_030--Hb_002217_200 Hb_001819_010 Hb_001819_010 Hb_007919_030--Hb_001819_010 Hb_000649_280 Hb_000649_280 Hb_000377_160--Hb_000649_280 Hb_000377_160--Hb_003767_010 Hb_123560_050 Hb_123560_050 Hb_000377_160--Hb_123560_050 Hb_005470_040 Hb_005470_040 Hb_000377_160--Hb_005470_040 Hb_000563_120 Hb_000563_120 Hb_000377_160--Hb_000563_120 Hb_031949_010 Hb_031949_010 Hb_000377_160--Hb_031949_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.336109 0.0929954 0.0807483 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0106184 0.0167128 0.0160529 0.291234 0.161207

CAGE analysis