Hb_001366_040

Information

Type transcription factor
Description TF Family: SNF2
Location Contig1366: 31226-43302
Sequence    

Annotation

kegg
ID vvi:100264308
description endoribonuclease Dicer homolog 1
nr
ID XP_012083084.1
description PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
swissprot
ID Q9SP32
description Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1 SV=2
trembl
ID A0A067K9A8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14170 PE=4 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10055: 31186-32698 , PASA_asmbl_10057: 33391-34018 , PASA_asmbl_10058: 33768-34876 , PASA_asmbl_10059: 35329-36775 , PASA_asmbl_10060: 37578-37941 , PASA_asmbl_10061: 38211-38989 , PASA_asmbl_10062: 39266-41982
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_040 0.0 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
2 Hb_004055_040 0.0562225184 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
3 Hb_002798_040 0.0677456158 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
4 Hb_004452_100 0.0695627356 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
5 Hb_031754_010 0.0701579643 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
6 Hb_001504_160 0.0708253363 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
7 Hb_000327_310 0.072151148 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
8 Hb_002400_180 0.0723887565 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000076_080 0.0737038618 - - PREDICTED: protein MOS2 [Jatropha curcas]
10 Hb_007407_040 0.0750346281 - - ankyrin repeat-containing protein, putative [Ricinus communis]
11 Hb_001975_020 0.0756628552 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
12 Hb_004724_360 0.0772138482 - - OTU-like cysteine protease family protein [Populus trichocarpa]
13 Hb_001871_040 0.0785195918 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
14 Hb_000244_250 0.0790186578 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
15 Hb_000107_100 0.0799803288 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
16 Hb_004310_060 0.080621003 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_000184_130 0.0808528384 - - PREDICTED: uncharacterized protein LOC105641544 isoform X1 [Jatropha curcas]
18 Hb_022408_010 0.0808727066 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
19 Hb_000915_050 0.0809301199 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003362_040 0.0812368261 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]

Gene co-expression network

sample Hb_001366_040 Hb_001366_040 Hb_004055_040 Hb_004055_040 Hb_001366_040--Hb_004055_040 Hb_002798_040 Hb_002798_040 Hb_001366_040--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_001366_040--Hb_004452_100 Hb_031754_010 Hb_031754_010 Hb_001366_040--Hb_031754_010 Hb_001504_160 Hb_001504_160 Hb_001366_040--Hb_001504_160 Hb_000327_310 Hb_000327_310 Hb_001366_040--Hb_000327_310 Hb_002928_060 Hb_002928_060 Hb_004055_040--Hb_002928_060 Hb_005730_030 Hb_005730_030 Hb_004055_040--Hb_005730_030 Hb_001871_040 Hb_001871_040 Hb_004055_040--Hb_001871_040 Hb_000244_250 Hb_000244_250 Hb_004055_040--Hb_000244_250 Hb_000915_050 Hb_000915_050 Hb_004055_040--Hb_000915_050 Hb_002798_040--Hb_004452_100 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_004452_100--Hb_011318_010 Hb_004452_100--Hb_000244_250 Hb_002039_010 Hb_002039_010 Hb_004452_100--Hb_002039_010 Hb_000184_110 Hb_000184_110 Hb_004452_100--Hb_000184_110 Hb_000335_010 Hb_000335_010 Hb_031754_010--Hb_000335_010 Hb_001975_020 Hb_001975_020 Hb_031754_010--Hb_001975_020 Hb_000035_040 Hb_000035_040 Hb_031754_010--Hb_000035_040 Hb_002883_010 Hb_002883_010 Hb_031754_010--Hb_002883_010 Hb_046615_020 Hb_046615_020 Hb_031754_010--Hb_046615_020 Hb_000424_010 Hb_000424_010 Hb_031754_010--Hb_000424_010 Hb_000076_080 Hb_000076_080 Hb_001504_160--Hb_000076_080 Hb_012654_010 Hb_012654_010 Hb_001504_160--Hb_012654_010 Hb_000230_330 Hb_000230_330 Hb_001504_160--Hb_000230_330 Hb_004724_360 Hb_004724_360 Hb_001504_160--Hb_004724_360 Hb_000107_100 Hb_000107_100 Hb_001504_160--Hb_000107_100 Hb_003384_030 Hb_003384_030 Hb_001504_160--Hb_003384_030 Hb_000327_310--Hb_001975_020 Hb_000327_310--Hb_004724_360 Hb_073171_080 Hb_073171_080 Hb_000327_310--Hb_073171_080 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_000327_310--Hb_046615_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5145 13.1422 4.9619 4.04518 26.8429 29.3699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9757 8.46928 16.5551 11.4175 6.36186

CAGE analysis