Hb_001366_050

Information

Type transcription factor
Description TF Family: B3
Location Contig1366: 57184-58161
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10290g
description hypothetical protein
nr
ID XP_011039561.1
description PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
swissprot
ID O82799
description B3 domain-containing transcription factor NGA1 OS=Arabidopsis thaliana GN=NGA1 PE=1 SV=1
trembl
ID A0A067K027
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14169 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_050 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X2 [Populus euphratica]
2 Hb_011440_010 0.1306741205 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
3 Hb_005614_030 0.1389211871 - - PREDICTED: transcription factor SCREAM2-like isoform X1 [Jatropha curcas]
4 Hb_005333_210 0.1394825345 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
5 Hb_170878_070 0.1452963399 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
6 Hb_000457_130 0.1482902813 - - hypothetical protein AALP_AA3G009100 [Arabis alpina]
7 Hb_001300_140 0.1538797805 - - -
8 Hb_001358_120 0.1542197255 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like [Populus euphratica]
9 Hb_000215_130 0.1598021157 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
10 Hb_002379_060 0.160759596 - - PREDICTED: MACPF domain-containing protein At1g14780 [Jatropha curcas]
11 Hb_000844_090 0.1618203321 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
12 Hb_009296_060 0.1626478144 - - glutathione s-transferase, putative [Ricinus communis]
13 Hb_000699_050 0.1640836252 - - -
14 Hb_123560_020 0.1720922298 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
15 Hb_001186_120 0.174055518 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
16 Hb_001226_100 0.1748916153 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_000753_180 0.1761539995 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
18 Hb_000087_120 0.1809483378 - - AMP dependent CoA ligase, putative [Ricinus communis]
19 Hb_106321_010 0.1815650066 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
20 Hb_000336_280 0.182020712 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_050 Hb_001366_050 Hb_011440_010 Hb_011440_010 Hb_001366_050--Hb_011440_010 Hb_005614_030 Hb_005614_030 Hb_001366_050--Hb_005614_030 Hb_005333_210 Hb_005333_210 Hb_001366_050--Hb_005333_210 Hb_170878_070 Hb_170878_070 Hb_001366_050--Hb_170878_070 Hb_000457_130 Hb_000457_130 Hb_001366_050--Hb_000457_130 Hb_001300_140 Hb_001300_140 Hb_001366_050--Hb_001300_140 Hb_011440_010--Hb_001300_140 Hb_123560_020 Hb_123560_020 Hb_011440_010--Hb_123560_020 Hb_009150_060 Hb_009150_060 Hb_011440_010--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_011440_010--Hb_005168_030 Hb_000753_180 Hb_000753_180 Hb_011440_010--Hb_000753_180 Hb_001358_120 Hb_001358_120 Hb_011440_010--Hb_001358_120 Hb_005614_030--Hb_005168_030 Hb_005614_030--Hb_011440_010 Hb_005614_030--Hb_123560_020 Hb_007676_040 Hb_007676_040 Hb_005614_030--Hb_007676_040 Hb_106321_010 Hb_106321_010 Hb_005614_030--Hb_106321_010 Hb_000336_280 Hb_000336_280 Hb_005333_210--Hb_000336_280 Hb_005333_210--Hb_001300_140 Hb_079394_010 Hb_079394_010 Hb_005333_210--Hb_079394_010 Hb_000215_130 Hb_000215_130 Hb_005333_210--Hb_000215_130 Hb_005333_210--Hb_000753_180 Hb_001004_130 Hb_001004_130 Hb_005333_210--Hb_001004_130 Hb_001565_010 Hb_001565_010 Hb_170878_070--Hb_001565_010 Hb_094148_010 Hb_094148_010 Hb_170878_070--Hb_094148_010 Hb_004627_020 Hb_004627_020 Hb_170878_070--Hb_004627_020 Hb_001186_120 Hb_001186_120 Hb_170878_070--Hb_001186_120 Hb_170878_070--Hb_000215_130 Hb_000465_180 Hb_000465_180 Hb_000457_130--Hb_000465_180 Hb_001597_110 Hb_001597_110 Hb_000457_130--Hb_001597_110 Hb_000457_130--Hb_001300_140 Hb_009812_010 Hb_009812_010 Hb_000457_130--Hb_009812_010 Hb_000844_090 Hb_000844_090 Hb_000457_130--Hb_000844_090 Hb_011576_010 Hb_011576_010 Hb_000457_130--Hb_011576_010 Hb_001300_140--Hb_009150_060 Hb_000836_260 Hb_000836_260 Hb_001300_140--Hb_000836_260 Hb_001300_140--Hb_000753_180 Hb_001300_140--Hb_000844_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0568928 0.356783 1.68053 0.300463 0 0.0506279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521038 0 0 2.83601 1.59023

CAGE analysis