Hb_001366_060

Information

Type -
Description -
Location Contig1366: 65294-70272
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10065: 64397-65378 , PASA_asmbl_10066: 65596-66984
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_060 0.0 - - -
2 Hb_006922_090 0.1236696852 - - PREDICTED: interaptin [Jatropha curcas]
3 Hb_001014_190 0.1474087929 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
4 Hb_009646_010 0.1494026891 - - PREDICTED: hyoscyamine 6-dioxygenase-like [Jatropha curcas]
5 Hb_005970_010 0.1537272254 - - PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1 isoform X2 [Jatropha curcas]
6 Hb_010872_040 0.1566628458 - - hypothetical protein F775_31993 [Aegilops tauschii]
7 Hb_001140_360 0.1584284962 - - -
8 Hb_000120_230 0.1621704666 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990-like [Jatropha curcas]
9 Hb_001341_200 0.1630398255 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
10 Hb_003227_010 0.1642003111 - - PREDICTED: dynamin-related protein 1E-like [Jatropha curcas]
11 Hb_000165_080 0.1672183826 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
12 Hb_001054_090 0.1676432476 - - Potassium channel SKOR, putative [Ricinus communis]
13 Hb_001004_140 0.1680714861 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
14 Hb_000139_140 0.1706161081 - - Acyl-CoA synthetase [Ricinus communis]
15 Hb_001148_090 0.1709874338 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
16 Hb_000732_190 0.1715154121 - - structural molecule, putative [Ricinus communis]
17 Hb_000220_110 0.1727842634 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
18 Hb_000144_120 0.1741588488 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_019280_020 0.1741781059 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
20 Hb_029510_100 0.1806051909 - - scab resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_001366_060 Hb_001366_060 Hb_006922_090 Hb_006922_090 Hb_001366_060--Hb_006922_090 Hb_001014_190 Hb_001014_190 Hb_001366_060--Hb_001014_190 Hb_009646_010 Hb_009646_010 Hb_001366_060--Hb_009646_010 Hb_005970_010 Hb_005970_010 Hb_001366_060--Hb_005970_010 Hb_010872_040 Hb_010872_040 Hb_001366_060--Hb_010872_040 Hb_001140_360 Hb_001140_360 Hb_001366_060--Hb_001140_360 Hb_000824_050 Hb_000824_050 Hb_006922_090--Hb_000824_050 Hb_012362_030 Hb_012362_030 Hb_006922_090--Hb_012362_030 Hb_000120_230 Hb_000120_230 Hb_006922_090--Hb_000120_230 Hb_029510_100 Hb_029510_100 Hb_006922_090--Hb_029510_100 Hb_019280_020 Hb_019280_020 Hb_006922_090--Hb_019280_020 Hb_001014_190--Hb_029510_100 Hb_001014_190--Hb_005970_010 Hb_004330_080 Hb_004330_080 Hb_001014_190--Hb_004330_080 Hb_006683_020 Hb_006683_020 Hb_001014_190--Hb_006683_020 Hb_000683_050 Hb_000683_050 Hb_001014_190--Hb_000683_050 Hb_001014_190--Hb_019280_020 Hb_000465_260 Hb_000465_260 Hb_009646_010--Hb_000465_260 Hb_002151_100 Hb_002151_100 Hb_009646_010--Hb_002151_100 Hb_000110_300 Hb_000110_300 Hb_009646_010--Hb_000110_300 Hb_001341_200 Hb_001341_200 Hb_009646_010--Hb_001341_200 Hb_000056_280 Hb_000056_280 Hb_009646_010--Hb_000056_280 Hb_128589_010 Hb_128589_010 Hb_009646_010--Hb_128589_010 Hb_001085_080 Hb_001085_080 Hb_005970_010--Hb_001085_080 Hb_000000_120 Hb_000000_120 Hb_005970_010--Hb_000000_120 Hb_012180_010 Hb_012180_010 Hb_005970_010--Hb_012180_010 Hb_001097_040 Hb_001097_040 Hb_005970_010--Hb_001097_040 Hb_003506_020 Hb_003506_020 Hb_005970_010--Hb_003506_020 Hb_028077_020 Hb_028077_020 Hb_005970_010--Hb_028077_020 Hb_003227_010 Hb_003227_010 Hb_010872_040--Hb_003227_010 Hb_000235_050 Hb_000235_050 Hb_010872_040--Hb_000235_050 Hb_010872_040--Hb_005970_010 Hb_028115_010 Hb_028115_010 Hb_010872_040--Hb_028115_010 Hb_010872_040--Hb_001014_190 Hb_000139_140 Hb_000139_140 Hb_010872_040--Hb_000139_140 Hb_001004_140 Hb_001004_140 Hb_001140_360--Hb_001004_140 Hb_000732_190 Hb_000732_190 Hb_001140_360--Hb_000732_190 Hb_000144_120 Hb_000144_120 Hb_001140_360--Hb_000144_120 Hb_012760_040 Hb_012760_040 Hb_001140_360--Hb_012760_040 Hb_082741_010 Hb_082741_010 Hb_001140_360--Hb_082741_010 Hb_008053_060 Hb_008053_060 Hb_001140_360--Hb_008053_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0407082 0.68551 0.481335 1.45414 0.273018 0.151015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.372663 0.41019 0.210477 1.18916 0.233424

CAGE analysis