Hb_001366_090

Information

Type transcription factor
Description TF Family: NAC
Location Contig1366: 85974-107837
Sequence    

Annotation

kegg
ID rcu:RCOM_1341380
description hypothetical protein
nr
ID XP_002515116.1
description hypothetical protein RCOM_1341380 [Ricinus communis]
swissprot
ID Q7GCL7
description NAC domain-containing protein 74 OS=Oryza sativa subsp. japonica GN=NAC74 PE=2 SV=1
trembl
ID B9RMX7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10067: 85497-87054 , PASA_asmbl_10068: 87075-87854 , PASA_asmbl_10070: 92442-92750 , PASA_asmbl_10072: 97344-98433 , PASA_asmbl_10074: 98817-99193
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_090 0.0 transcription factor TF Family: NAC hypothetical protein RCOM_1341380 [Ricinus communis]
2 Hb_006573_040 0.0542946698 - - DNA binding protein, putative [Ricinus communis]
3 Hb_002232_480 0.0668098758 - - PREDICTED: telomerase reverse transcriptase [Jatropha curcas]
4 Hb_004994_240 0.0688039431 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
5 Hb_004586_060 0.0688399266 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
6 Hb_000046_570 0.0695478463 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
7 Hb_000236_490 0.0757611851 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_002492_010 0.0770696326 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
9 Hb_004096_180 0.0780131258 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
10 Hb_005381_020 0.0784403227 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
11 Hb_000089_210 0.0785779115 - - unknown [Medicago truncatula]
12 Hb_000390_250 0.079435086 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
13 Hb_002311_380 0.0794362637 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]
14 Hb_001300_010 0.0796650743 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000513_090 0.081263107 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
16 Hb_007248_030 0.0831593345 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
17 Hb_007062_040 0.0835834195 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
18 Hb_010775_030 0.0847068322 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
19 Hb_004096_160 0.0847472118 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
20 Hb_002909_040 0.0856665951 desease resistance Gene Name: AAA PREDICTED: 26S protease regulatory subunit 6B homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001366_090 Hb_001366_090 Hb_006573_040 Hb_006573_040 Hb_001366_090--Hb_006573_040 Hb_002232_480 Hb_002232_480 Hb_001366_090--Hb_002232_480 Hb_004994_240 Hb_004994_240 Hb_001366_090--Hb_004994_240 Hb_004586_060 Hb_004586_060 Hb_001366_090--Hb_004586_060 Hb_000046_570 Hb_000046_570 Hb_001366_090--Hb_000046_570 Hb_000236_490 Hb_000236_490 Hb_001366_090--Hb_000236_490 Hb_006573_040--Hb_004994_240 Hb_006573_040--Hb_002232_480 Hb_004096_180 Hb_004096_180 Hb_006573_040--Hb_004096_180 Hb_001300_010 Hb_001300_010 Hb_006573_040--Hb_001300_010 Hb_089839_010 Hb_089839_010 Hb_006573_040--Hb_089839_010 Hb_002232_480--Hb_004994_240 Hb_011360_050 Hb_011360_050 Hb_002232_480--Hb_011360_050 Hb_000802_090 Hb_000802_090 Hb_002232_480--Hb_000802_090 Hb_002232_480--Hb_001300_010 Hb_007017_040 Hb_007017_040 Hb_002232_480--Hb_007017_040 Hb_004994_240--Hb_001300_010 Hb_002492_010 Hb_002492_010 Hb_004994_240--Hb_002492_010 Hb_012239_020 Hb_012239_020 Hb_004994_240--Hb_012239_020 Hb_003398_080 Hb_003398_080 Hb_004994_240--Hb_003398_080 Hb_000856_040 Hb_000856_040 Hb_004994_240--Hb_000856_040 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_007062_040 Hb_007062_040 Hb_004586_060--Hb_007062_040 Hb_004586_060--Hb_000046_570 Hb_001377_310 Hb_001377_310 Hb_004586_060--Hb_001377_310 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_005460_050 Hb_005460_050 Hb_004586_060--Hb_005460_050 Hb_000046_570--Hb_007062_040 Hb_000046_570--Hb_007248_030 Hb_000390_250 Hb_000390_250 Hb_000046_570--Hb_000390_250 Hb_001405_210 Hb_001405_210 Hb_000046_570--Hb_001405_210 Hb_003912_040 Hb_003912_040 Hb_000046_570--Hb_003912_040 Hb_000236_490--Hb_004586_060 Hb_000236_490--Hb_007062_040 Hb_004096_160 Hb_004096_160 Hb_000236_490--Hb_004096_160 Hb_000513_090 Hb_000513_090 Hb_000236_490--Hb_000513_090 Hb_002909_040 Hb_002909_040 Hb_000236_490--Hb_002909_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.6873 5.25863 5.99482 5.78635 2.45728 3.03552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.45862 3.07218 2.74923 3.72596 2.45982

CAGE analysis