Hb_001366_130

Information

Type -
Description -
Location Contig1366: 118241-121458
Sequence    

Annotation

kegg
ID cmo:103486828
description ribosome production factor 1
nr
ID CDP06320.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q8AVP1
description Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
trembl
ID A0A068UCP4
description Coffea canephora DH200=94 genomic scaffold, scaffold_21 OS=Coffea canephora GN=GSCOC_T00023097001 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ribosome production factor 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_130 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_006120_080 0.1709334567 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
3 Hb_000920_220 0.1865594703 - - PREDICTED: uncharacterized protein LOC105631216 [Jatropha curcas]
4 Hb_008667_060 0.1907558048 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
5 Hb_178793_010 0.1933150611 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
6 Hb_002874_170 0.1945171074 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
7 Hb_000038_040 0.1971529251 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
8 Hb_000107_440 0.2007319364 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
9 Hb_000566_190 0.2032966572 - - unnamed protein product [Vitis vinifera]
10 Hb_002477_120 0.2143388123 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
11 Hb_004007_120 0.2161699764 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
12 Hb_000649_300 0.2167072983 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
13 Hb_006846_020 0.2175869651 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
14 Hb_002781_010 0.2175936085 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
15 Hb_002154_020 0.2177249516 - - protein with unknown function [Ricinus communis]
16 Hb_019863_060 0.2182763715 - - PREDICTED: target of Myb protein 1-like [Populus euphratica]
17 Hb_004631_110 0.2191996892 - - ring finger protein, putative [Ricinus communis]
18 Hb_006935_010 0.2192248139 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
19 Hb_002804_010 0.2197908444 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
20 Hb_002968_030 0.2198775025 - - Pectinesterase-1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_130 Hb_001366_130 Hb_006120_080 Hb_006120_080 Hb_001366_130--Hb_006120_080 Hb_000920_220 Hb_000920_220 Hb_001366_130--Hb_000920_220 Hb_008667_060 Hb_008667_060 Hb_001366_130--Hb_008667_060 Hb_178793_010 Hb_178793_010 Hb_001366_130--Hb_178793_010 Hb_002874_170 Hb_002874_170 Hb_001366_130--Hb_002874_170 Hb_000038_040 Hb_000038_040 Hb_001366_130--Hb_000038_040 Hb_004837_050 Hb_004837_050 Hb_006120_080--Hb_004837_050 Hb_002804_010 Hb_002804_010 Hb_006120_080--Hb_002804_010 Hb_006120_080--Hb_178793_010 Hb_002073_020 Hb_002073_020 Hb_006120_080--Hb_002073_020 Hb_006120_080--Hb_002874_170 Hb_005000_050 Hb_005000_050 Hb_000920_220--Hb_005000_050 Hb_164926_050 Hb_164926_050 Hb_000920_220--Hb_164926_050 Hb_004032_090 Hb_004032_090 Hb_000920_220--Hb_004032_090 Hb_023386_050 Hb_023386_050 Hb_000920_220--Hb_023386_050 Hb_001898_010 Hb_001898_010 Hb_000920_220--Hb_001898_010 Hb_002375_060 Hb_002375_060 Hb_000920_220--Hb_002375_060 Hb_000059_130 Hb_000059_130 Hb_008667_060--Hb_000059_130 Hb_002477_120 Hb_002477_120 Hb_008667_060--Hb_002477_120 Hb_000676_040 Hb_000676_040 Hb_008667_060--Hb_000676_040 Hb_002471_140 Hb_002471_140 Hb_008667_060--Hb_002471_140 Hb_002524_020 Hb_002524_020 Hb_008667_060--Hb_002524_020 Hb_000345_340 Hb_000345_340 Hb_008667_060--Hb_000345_340 Hb_018691_020 Hb_018691_020 Hb_178793_010--Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_178793_010--Hb_028487_130 Hb_002849_070 Hb_002849_070 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_178793_010--Hb_005000_050 Hb_178793_010--Hb_000920_220 Hb_000649_300 Hb_000649_300 Hb_002874_170--Hb_000649_300 Hb_172676_010 Hb_172676_010 Hb_002874_170--Hb_172676_010 Hb_001951_240 Hb_001951_240 Hb_002874_170--Hb_001951_240 Hb_002874_170--Hb_002073_020 Hb_019863_060 Hb_019863_060 Hb_002874_170--Hb_019863_060 Hb_005496_160 Hb_005496_160 Hb_002874_170--Hb_005496_160 Hb_006846_020 Hb_006846_020 Hb_000038_040--Hb_006846_020 Hb_006935_010 Hb_006935_010 Hb_000038_040--Hb_006935_010 Hb_000107_440 Hb_000107_440 Hb_000038_040--Hb_000107_440 Hb_007007_080 Hb_007007_080 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0824064 1.53792 0.575461 0.536287 0 0.332438
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0955267 0.225244 0 0.614484 0.292303

CAGE analysis