Hb_001366_140

Information

Type -
Description -
Location Contig1366: 123113-123517
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10420g
description hypothetical protein
nr
ID XP_006375403.1
description hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FQB0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s10420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_140 0.0 - - hypothetical protein POPTR_0014s10420g [Populus trichocarpa]
2 Hb_003414_050 0.1328359107 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
3 Hb_001421_070 0.1350526437 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
4 Hb_001322_150 0.1379672599 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
5 Hb_000699_090 0.1439386202 - - cyclophilin, putative [Ricinus communis]
6 Hb_000005_090 0.1455721181 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
7 Hb_004127_020 0.1495851206 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
8 Hb_011236_010 0.151689003 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
9 Hb_000028_100 0.1521213824 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
10 Hb_004102_110 0.1524837271 - - Monothiol glutaredoxin-4, putative [Ricinus communis]
11 Hb_005667_040 0.1529492935 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
12 Hb_014720_040 0.1566354607 - - PREDICTED: 50S ribosomal protein L12, chloroplastic [Jatropha curcas]
13 Hb_000483_390 0.1567805035 - - PREDICTED: vesicle-associated protein 2-1 [Jatropha curcas]
14 Hb_000656_170 0.1573632238 - - lsm1, putative [Ricinus communis]
15 Hb_001513_010 0.1581156599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003994_250 0.158648372 - - membrane associated ring finger 1,8, putative [Ricinus communis]
17 Hb_005867_020 0.1600631554 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
18 Hb_002701_020 0.1620298203 - - PREDICTED: transcription factor BIM2 [Jatropha curcas]
19 Hb_003494_050 0.1621029461 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
20 Hb_032225_010 0.1626896927 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_140 Hb_001366_140 Hb_003414_050 Hb_003414_050 Hb_001366_140--Hb_003414_050 Hb_001421_070 Hb_001421_070 Hb_001366_140--Hb_001421_070 Hb_001322_150 Hb_001322_150 Hb_001366_140--Hb_001322_150 Hb_000699_090 Hb_000699_090 Hb_001366_140--Hb_000699_090 Hb_000005_090 Hb_000005_090 Hb_001366_140--Hb_000005_090 Hb_004127_020 Hb_004127_020 Hb_001366_140--Hb_004127_020 Hb_003671_020 Hb_003671_020 Hb_003414_050--Hb_003671_020 Hb_009615_070 Hb_009615_070 Hb_003414_050--Hb_009615_070 Hb_000701_100 Hb_000701_100 Hb_003414_050--Hb_000701_100 Hb_000125_100 Hb_000125_100 Hb_003414_050--Hb_000125_100 Hb_000483_390 Hb_000483_390 Hb_003414_050--Hb_000483_390 Hb_007009_010 Hb_007009_010 Hb_003414_050--Hb_007009_010 Hb_001421_070--Hb_000699_090 Hb_000028_100 Hb_000028_100 Hb_001421_070--Hb_000028_100 Hb_003038_190 Hb_003038_190 Hb_001421_070--Hb_003038_190 Hb_011236_010 Hb_011236_010 Hb_001421_070--Hb_011236_010 Hb_003327_050 Hb_003327_050 Hb_001421_070--Hb_003327_050 Hb_015175_030 Hb_015175_030 Hb_001322_150--Hb_015175_030 Hb_001322_150--Hb_003414_050 Hb_000656_170 Hb_000656_170 Hb_001322_150--Hb_000656_170 Hb_001322_150--Hb_003671_020 Hb_007100_030 Hb_007100_030 Hb_001322_150--Hb_007100_030 Hb_001322_150--Hb_000125_100 Hb_000699_090--Hb_011236_010 Hb_000906_040 Hb_000906_040 Hb_000699_090--Hb_000906_040 Hb_000577_090 Hb_000577_090 Hb_000699_090--Hb_000577_090 Hb_000265_050 Hb_000265_050 Hb_000699_090--Hb_000265_050 Hb_004223_040 Hb_004223_040 Hb_000699_090--Hb_004223_040 Hb_000574_160 Hb_000574_160 Hb_000699_090--Hb_000574_160 Hb_000001_060 Hb_000001_060 Hb_000005_090--Hb_000001_060 Hb_004108_070 Hb_004108_070 Hb_000005_090--Hb_004108_070 Hb_002105_100 Hb_002105_100 Hb_000005_090--Hb_002105_100 Hb_006693_020 Hb_006693_020 Hb_000005_090--Hb_006693_020 Hb_000005_090--Hb_004127_020 Hb_004899_370 Hb_004899_370 Hb_000005_090--Hb_004899_370 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_004127_020--Hb_000265_050 Hb_004127_020--Hb_004899_370 Hb_002798_020 Hb_002798_020 Hb_004127_020--Hb_002798_020 Hb_000840_180 Hb_000840_180 Hb_004127_020--Hb_000840_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.1341 7.36475 4.00484 16.7297 6.48375 14.6686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.0057 32.7106 9.33188 4.70451 9.17224

CAGE analysis