Hb_001366_180

Information

Type -
Description -
Location Contig1366: 136109-140671
Sequence    

Annotation

kegg
ID rcu:RCOM_1341630
description aig1, putative
nr
ID XP_012065294.1
description PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
swissprot
ID O23680
description Translocase of chloroplast 33, chloroplastic OS=Arabidopsis thaliana GN=TOC33 PE=1 SV=1
trembl
ID A0A067L9C1
description Translocase of chloroplast OS=Jatropha curcas GN=JCGZ_23021 PE=3 SV=1
Gene Ontology
ID GO:0009707
description translocase of chloroplast chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10081: 136168-140843 , PASA_asmbl_10083: 138097-138228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_180 0.0 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
2 Hb_006274_030 0.048344956 - - F-box and wd40 domain protein, putative [Ricinus communis]
3 Hb_005144_050 0.0484297985 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
4 Hb_000289_110 0.0611322708 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
5 Hb_000479_250 0.0665839948 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
6 Hb_006478_020 0.0687749204 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_002014_030 0.0705742087 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
8 Hb_000483_300 0.0735689206 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
9 Hb_029510_050 0.0781332911 - - PREDICTED: golgin candidate 5 [Jatropha curcas]
10 Hb_002289_080 0.078655042 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
11 Hb_001369_750 0.0786822753 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
12 Hb_003153_010 0.0788810246 - - PREDICTED: diacylglycerol kinase 3-like [Jatropha curcas]
13 Hb_024128_020 0.0808177722 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
14 Hb_025098_010 0.0808273314 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
15 Hb_001006_020 0.0814817598 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
16 Hb_001189_070 0.0819644476 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
17 Hb_000053_020 0.0822671756 - - F-box and wd40 domain protein, putative [Ricinus communis]
18 Hb_002811_130 0.0828870604 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
19 Hb_001489_080 0.0830840972 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_008841_020 0.0840927569 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_180 Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_000289_110 Hb_000289_110 Hb_001366_180--Hb_000289_110 Hb_000479_250 Hb_000479_250 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_002014_030 Hb_002014_030 Hb_001366_180--Hb_002014_030 Hb_006274_030--Hb_000479_250 Hb_001971_010 Hb_001971_010 Hb_006274_030--Hb_001971_010 Hb_000053_020 Hb_000053_020 Hb_006274_030--Hb_000053_020 Hb_006274_030--Hb_006478_020 Hb_006274_030--Hb_002014_030 Hb_025098_010 Hb_025098_010 Hb_005144_050--Hb_025098_010 Hb_185255_010 Hb_185255_010 Hb_005144_050--Hb_185255_010 Hb_002289_080 Hb_002289_080 Hb_005144_050--Hb_002289_080 Hb_005144_050--Hb_000289_110 Hb_024128_020 Hb_024128_020 Hb_005144_050--Hb_024128_020 Hb_001006_020 Hb_001006_020 Hb_000289_110--Hb_001006_020 Hb_002811_130 Hb_002811_130 Hb_000289_110--Hb_002811_130 Hb_000289_110--Hb_002014_030 Hb_000337_050 Hb_000337_050 Hb_000289_110--Hb_000337_050 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_006478_020--Hb_001971_010 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.5159 16.8261 24.1919 41.4022 24.6065 32.0383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.0063 43.8553 37.8765 32.1924 55.2353

CAGE analysis