Hb_001366_190

Information

Type -
Description -
Location Contig1366: 141977-143782
Sequence    

Annotation

kegg
ID rcu:RCOM_1341690
description hypothetical protein
nr
ID XP_012070672.1
description PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
swissprot
ID Q6P4L9
description Nuclear factor related to kappa-B-binding protein OS=Xenopus tropicalis GN=nfrkb PE=2 SV=1
trembl
ID A0A067KVD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00715 PE=4 SV=1
Gene Ontology
ID GO:0031011
description nuclear factor related to kappa-b-binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10084: 141746-144828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_190 0.0 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
2 Hb_000398_180 0.0706504252 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_000802_080 0.0718445951 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
4 Hb_007508_070 0.0761738573 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_028872_140 0.0779227128 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
6 Hb_001454_210 0.0787883917 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
7 Hb_005305_080 0.0788803863 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
8 Hb_000300_640 0.0796576751 - - PREDICTED: uncharacterized protein LOC100855285 [Vitis vinifera]
9 Hb_000245_130 0.0815627207 - - PREDICTED: nuclear pore complex protein NUP35 [Jatropha curcas]
10 Hb_002078_150 0.0819505569 - - protein with unknown function [Ricinus communis]
11 Hb_002811_360 0.0820645881 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
12 Hb_006332_020 0.0839542428 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_004812_010 0.0841975601 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
14 Hb_004128_190 0.0845714382 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
15 Hb_004724_200 0.0847990283 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
16 Hb_004109_190 0.0852420495 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
17 Hb_001138_050 0.0859537833 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
18 Hb_001377_290 0.0872736776 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
19 Hb_003847_080 0.0873805795 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
20 Hb_007441_120 0.0877308717 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_190 Hb_001366_190 Hb_000398_180 Hb_000398_180 Hb_001366_190--Hb_000398_180 Hb_000802_080 Hb_000802_080 Hb_001366_190--Hb_000802_080 Hb_007508_070 Hb_007508_070 Hb_001366_190--Hb_007508_070 Hb_028872_140 Hb_028872_140 Hb_001366_190--Hb_028872_140 Hb_001454_210 Hb_001454_210 Hb_001366_190--Hb_001454_210 Hb_005305_080 Hb_005305_080 Hb_001366_190--Hb_005305_080 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070 Hb_001789_090 Hb_001789_090 Hb_000802_080--Hb_001789_090 Hb_002811_360 Hb_002811_360 Hb_000802_080--Hb_002811_360 Hb_001663_030 Hb_001663_030 Hb_000802_080--Hb_001663_030 Hb_001301_200 Hb_001301_200 Hb_000802_080--Hb_001301_200 Hb_023344_030 Hb_023344_030 Hb_000802_080--Hb_023344_030 Hb_015001_020 Hb_015001_020 Hb_007508_070--Hb_015001_020 Hb_004812_010 Hb_004812_010 Hb_007508_070--Hb_004812_010 Hb_007508_070--Hb_001454_210 Hb_000567_260 Hb_000567_260 Hb_007508_070--Hb_000567_260 Hb_007508_070--Hb_028872_140 Hb_028872_140--Hb_001454_210 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_009111_050 Hb_009111_050 Hb_028872_140--Hb_009111_050 Hb_028872_140--Hb_002811_360 Hb_015306_020 Hb_015306_020 Hb_028872_140--Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_001454_210--Hb_009111_050 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_000876_070 Hb_000876_070 Hb_005305_080--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5046 9.04179 3.45869 12.6658 22.5448 23.59
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6068 23.559 21.8209 11.2765 8.97025

CAGE analysis