Hb_001366_200

Information

Type -
Description -
Location Contig1366: 147174-150963
Sequence    

Annotation

kegg
ID rcu:RCOM_1341700
description hypothetical protein
nr
ID XP_002515138.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SE96
description GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1
trembl
ID B9RMZ9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10085: 147296-148983 , PASA_asmbl_10086: 149010-150671
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_200 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004899_320 0.0733695729 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
3 Hb_005488_010 0.0810992686 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002411_200 0.085476447 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000836_070 0.0874368845 - - protein binding protein, putative [Ricinus communis]
6 Hb_002716_070 0.0880725415 - - PREDICTED: protein ABIL2 [Jatropha curcas]
7 Hb_008289_060 0.0916650223 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
8 Hb_000223_150 0.0919229494 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
9 Hb_000086_570 0.0953962323 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_001677_110 0.0964367476 - - Protein YIPF1, putative [Ricinus communis]
11 Hb_000983_100 0.0977899487 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]
12 Hb_084849_020 0.0992920411 - - ARF GTPase activator, putative [Ricinus communis]
13 Hb_001369_050 0.101546036 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
14 Hb_000059_220 0.1029250711 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
15 Hb_001427_120 0.1029479244 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_055062_030 0.1032270929 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_071736_020 0.1036900888 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
18 Hb_002028_130 0.1037241968 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
19 Hb_000614_230 0.1039624358 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
20 Hb_000329_040 0.1043437748 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_200 Hb_001366_200 Hb_004899_320 Hb_004899_320 Hb_001366_200--Hb_004899_320 Hb_005488_010 Hb_005488_010 Hb_001366_200--Hb_005488_010 Hb_002411_200 Hb_002411_200 Hb_001366_200--Hb_002411_200 Hb_000836_070 Hb_000836_070 Hb_001366_200--Hb_000836_070 Hb_002716_070 Hb_002716_070 Hb_001366_200--Hb_002716_070 Hb_008289_060 Hb_008289_060 Hb_001366_200--Hb_008289_060 Hb_004899_320--Hb_005488_010 Hb_004899_320--Hb_000836_070 Hb_006693_030 Hb_006693_030 Hb_004899_320--Hb_006693_030 Hb_000956_010 Hb_000956_010 Hb_004899_320--Hb_000956_010 Hb_000329_040 Hb_000329_040 Hb_004899_320--Hb_000329_040 Hb_016065_010 Hb_016065_010 Hb_005488_010--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_005488_010--Hb_055062_030 Hb_000205_270 Hb_000205_270 Hb_005488_010--Hb_000205_270 Hb_005488_010--Hb_000836_070 Hb_005488_010--Hb_008289_060 Hb_021650_030 Hb_021650_030 Hb_002411_200--Hb_021650_030 Hb_000086_570 Hb_000086_570 Hb_002411_200--Hb_000086_570 Hb_000091_090 Hb_000091_090 Hb_002411_200--Hb_000091_090 Hb_014720_080 Hb_014720_080 Hb_002411_200--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_002411_200--Hb_001881_020 Hb_020178_070 Hb_020178_070 Hb_002411_200--Hb_020178_070 Hb_000923_070 Hb_000923_070 Hb_000836_070--Hb_000923_070 Hb_008453_090 Hb_008453_090 Hb_000836_070--Hb_008453_090 Hb_010710_040 Hb_010710_040 Hb_000836_070--Hb_010710_040 Hb_003018_190 Hb_003018_190 Hb_000836_070--Hb_003018_190 Hb_000170_010 Hb_000170_010 Hb_002716_070--Hb_000170_010 Hb_003175_040 Hb_003175_040 Hb_002716_070--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_002716_070--Hb_004837_140 Hb_002028_130 Hb_002028_130 Hb_002716_070--Hb_002028_130 Hb_001718_100 Hb_001718_100 Hb_002716_070--Hb_001718_100 Hb_002716_070--Hb_000205_270 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.5783 10.8091 2.71629 11.7447 27.9597 38.6125
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.1694 49.8229 65.1063 9.48127 11.6276

CAGE analysis