Hb_001366_230

Information

Type -
Description -
Location Contig1366: 207082-208772
Sequence    

Annotation

kegg
ID rcu:RCOM_1341920
description hypothetical protein
nr
ID XP_002515140.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ULE6
description Paladin OS=Homo sapiens GN=PALD1 PE=1 SV=3
trembl
ID B9RN01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1341920 PE=4 SV=1
Gene Ontology
ID GO:0005829
description paladin-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10093: 189934-208696 , PASA_asmbl_10094: 207239-208751 , PASA_asmbl_10097: 207930-208184
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_230 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001191_100 0.0615995307 - - F-actin capping protein beta subunit [Populus trichocarpa]
3 Hb_025087_010 0.06959112 - - PREDICTED: RING-H2 finger protein ATL56 [Jatropha curcas]
4 Hb_183963_020 0.0739995644 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
5 Hb_000313_380 0.074126235 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001804_040 0.0757567542 - - conserved hypothetical protein [Ricinus communis]
7 Hb_026988_020 0.0800043627 - - outward rectifying K+ channel [Hevea brasiliensis]
8 Hb_000956_010 0.0811215379 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
9 Hb_009026_050 0.0820199285 - - vacuolar ATPase F subunit [Hevea brasiliensis]
10 Hb_001366_220 0.0840185518 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008695_190 0.0871496022 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
12 Hb_001427_120 0.0881719683 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
13 Hb_000085_310 0.0899194681 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
14 Hb_006569_020 0.0903157521 - - hypothetical protein POPTR_0010s22990g [Populus trichocarpa]
15 Hb_002326_030 0.0929352681 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein REM16-like isoform X1 [Jatropha curcas]
16 Hb_001722_040 0.0938489254 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
17 Hb_000173_170 0.0947092267 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_002025_320 0.0959703797 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
19 Hb_000376_050 0.0972701239 - - polyadenylate-binding protein, putative [Ricinus communis]
20 Hb_000072_280 0.0979316856 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001366_230 Hb_001366_230 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_000313_380 Hb_000313_380 Hb_001366_230--Hb_000313_380 Hb_001804_040 Hb_001804_040 Hb_001366_230--Hb_001804_040 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000173_170 Hb_000173_170 Hb_001191_100--Hb_000173_170 Hb_000252_040 Hb_000252_040 Hb_001191_100--Hb_000252_040 Hb_065500_050 Hb_065500_050 Hb_001191_100--Hb_065500_050 Hb_000427_110 Hb_000427_110 Hb_001191_100--Hb_000427_110 Hb_001366_220 Hb_001366_220 Hb_001191_100--Hb_001366_220 Hb_025087_010--Hb_183963_020 Hb_008695_190 Hb_008695_190 Hb_025087_010--Hb_008695_190 Hb_009026_050 Hb_009026_050 Hb_025087_010--Hb_009026_050 Hb_001722_040 Hb_001722_040 Hb_025087_010--Hb_001722_040 Hb_005000_290 Hb_005000_290 Hb_025087_010--Hb_005000_290 Hb_000085_300 Hb_000085_300 Hb_183963_020--Hb_000085_300 Hb_183963_020--Hb_001722_040 Hb_007021_020 Hb_007021_020 Hb_183963_020--Hb_007021_020 Hb_002387_060 Hb_002387_060 Hb_183963_020--Hb_002387_060 Hb_000809_040 Hb_000809_040 Hb_000313_380--Hb_000809_040 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_000983_100 Hb_000983_100 Hb_026988_020--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_026988_020--Hb_000956_010 Hb_000861_040 Hb_000861_040 Hb_026988_020--Hb_000861_040 Hb_004108_050 Hb_004108_050 Hb_026988_020--Hb_004108_050 Hb_001677_110 Hb_001677_110 Hb_026988_020--Hb_001677_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.8905 9.70937 6.70787 13.3073 80.5192 73.4707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.898 108.719 88.9841 16.3973 6.3031

CAGE analysis