Hb_001366_250

Information

Type -
Description -
Location Contig1366: 214740-217600
Sequence    

Annotation

kegg
ID rcu:RCOM_1342040
description hydrolase, hydrolyzing O-glycosyl compounds, putative
nr
ID XP_012083050.1
description PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
swissprot
ID Q8L5J1
description Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2
trembl
ID A0A067JWM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14142 PE=3 SV=1
Gene Ontology
ID GO:0004553
description mannan endo- -beta-mannosidase 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_250 0.0 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
2 Hb_005000_310 0.1290278399 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
3 Hb_029510_110 0.1298466333 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
4 Hb_004445_090 0.1314733456 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007527_020 0.1360648603 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
6 Hb_000281_200 0.1476902625 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
7 Hb_000739_130 0.1491393951 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000563_610 0.1511987851 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
9 Hb_001104_200 0.152056533 - - Phytosulfokine 3 precursor, putative [Theobroma cacao]
10 Hb_000204_030 0.1542199139 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_011486_030 0.1554747241 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
12 Hb_000019_220 0.1563051737 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]
13 Hb_000402_220 0.1568012568 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_002232_370 0.1596193946 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
15 Hb_000648_120 0.1604698871 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]
16 Hb_010407_120 0.1644568807 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
17 Hb_005356_010 0.164579733 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]
18 Hb_061195_010 0.1665492837 - - Galactose oxidase precursor, putative [Ricinus communis]
19 Hb_000513_110 0.167038517 - - PREDICTED: germin-like protein subfamily 1 member 13 [Populus euphratica]
20 Hb_012796_050 0.1675002083 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_250 Hb_001366_250 Hb_005000_310 Hb_005000_310 Hb_001366_250--Hb_005000_310 Hb_029510_110 Hb_029510_110 Hb_001366_250--Hb_029510_110 Hb_004445_090 Hb_004445_090 Hb_001366_250--Hb_004445_090 Hb_007527_020 Hb_007527_020 Hb_001366_250--Hb_007527_020 Hb_000281_200 Hb_000281_200 Hb_001366_250--Hb_000281_200 Hb_000739_130 Hb_000739_130 Hb_001366_250--Hb_000739_130 Hb_000019_220 Hb_000019_220 Hb_005000_310--Hb_000019_220 Hb_000614_180 Hb_000614_180 Hb_005000_310--Hb_000614_180 Hb_000045_230 Hb_000045_230 Hb_005000_310--Hb_000045_230 Hb_002311_240 Hb_002311_240 Hb_005000_310--Hb_002311_240 Hb_003057_080 Hb_003057_080 Hb_005000_310--Hb_003057_080 Hb_001104_200 Hb_001104_200 Hb_029510_110--Hb_001104_200 Hb_061195_010 Hb_061195_010 Hb_029510_110--Hb_061195_010 Hb_000204_030 Hb_000204_030 Hb_029510_110--Hb_000204_030 Hb_000563_610 Hb_000563_610 Hb_029510_110--Hb_000563_610 Hb_012239_080 Hb_012239_080 Hb_029510_110--Hb_012239_080 Hb_000245_140 Hb_000245_140 Hb_004445_090--Hb_000245_140 Hb_004445_090--Hb_000563_610 Hb_004445_090--Hb_000204_030 Hb_002232_370 Hb_002232_370 Hb_004445_090--Hb_002232_370 Hb_004445_090--Hb_000739_130 Hb_000438_190 Hb_000438_190 Hb_004445_090--Hb_000438_190 Hb_005356_010 Hb_005356_010 Hb_007527_020--Hb_005356_010 Hb_002805_230 Hb_002805_230 Hb_007527_020--Hb_002805_230 Hb_007527_020--Hb_000281_200 Hb_007532_050 Hb_007532_050 Hb_007527_020--Hb_007532_050 Hb_000513_110 Hb_000513_110 Hb_007527_020--Hb_000513_110 Hb_001544_040 Hb_001544_040 Hb_007527_020--Hb_001544_040 Hb_001288_010 Hb_001288_010 Hb_000281_200--Hb_001288_010 Hb_000281_200--Hb_005356_010 Hb_003968_020 Hb_003968_020 Hb_000281_200--Hb_003968_020 Hb_178389_020 Hb_178389_020 Hb_000281_200--Hb_178389_020 Hb_039655_010 Hb_039655_010 Hb_000281_200--Hb_039655_010 Hb_000739_130--Hb_000563_610 Hb_000739_130--Hb_007532_050 Hb_000739_130--Hb_007527_020 Hb_010407_120 Hb_010407_120 Hb_000739_130--Hb_010407_120 Hb_159769_010 Hb_159769_010 Hb_000739_130--Hb_159769_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0252281 0.110778 0.0781125 0.224904 0.011812 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0861494 0.0225929 0 2.3695 0.0474041

CAGE analysis