Hb_001366_270

Information

Type -
Description -
Location Contig1366: 240988-244347
Sequence    

Annotation

kegg
ID rcu:RCOM_1342050
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.12.2 1.3.1.74)
nr
ID XP_012083049.1
description PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
swissprot
ID Q9S7I6
description LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=2 SV=1
trembl
ID A0A067K7X6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14141 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rpk2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10098: 243218-243563
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_270 0.0 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
2 Hb_005000_090 0.0841854342 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
3 Hb_005181_050 0.0866134713 - - PREDICTED: phytochrome B isoform X1 [Jatropha curcas]
4 Hb_000809_250 0.0928638396 - - PREDICTED: uncharacterized protein LOC105639683 [Jatropha curcas]
5 Hb_001341_010 0.0929898904 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
6 Hb_001511_180 0.0962110775 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
7 Hb_000540_100 0.0981577121 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
8 Hb_011925_020 0.0982444387 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_000890_070 0.0990349705 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_009476_120 0.0994486345 - - Clathrin heavy chain 1 [Glycine soja]
11 Hb_002311_130 0.1004637481 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
12 Hb_021297_020 0.10137657 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_000492_080 0.1023780775 - - PREDICTED: probable sucrose-phosphate synthase 1 [Jatropha curcas]
14 Hb_000599_360 0.1024591821 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
15 Hb_000125_180 0.1025105816 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]
16 Hb_000022_160 0.1029600115 - - -
17 Hb_003340_010 0.1046251148 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
18 Hb_001006_010 0.1050410603 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
19 Hb_000674_010 0.107722942 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
20 Hb_000866_110 0.1079428693 - - PREDICTED: uncharacterized protein LOC105642980 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_270 Hb_001366_270 Hb_005000_090 Hb_005000_090 Hb_001366_270--Hb_005000_090 Hb_005181_050 Hb_005181_050 Hb_001366_270--Hb_005181_050 Hb_000809_250 Hb_000809_250 Hb_001366_270--Hb_000809_250 Hb_001341_010 Hb_001341_010 Hb_001366_270--Hb_001341_010 Hb_001511_180 Hb_001511_180 Hb_001366_270--Hb_001511_180 Hb_000540_100 Hb_000540_100 Hb_001366_270--Hb_000540_100 Hb_102763_010 Hb_102763_010 Hb_005000_090--Hb_102763_010 Hb_009476_120 Hb_009476_120 Hb_005000_090--Hb_009476_120 Hb_001998_220 Hb_001998_220 Hb_005000_090--Hb_001998_220 Hb_000492_080 Hb_000492_080 Hb_005000_090--Hb_000492_080 Hb_000674_010 Hb_000674_010 Hb_005000_090--Hb_000674_010 Hb_003124_270 Hb_003124_270 Hb_005181_050--Hb_003124_270 Hb_000167_120 Hb_000167_120 Hb_005181_050--Hb_000167_120 Hb_003680_020 Hb_003680_020 Hb_005181_050--Hb_003680_020 Hb_000125_180 Hb_000125_180 Hb_005181_050--Hb_000125_180 Hb_000844_050 Hb_000844_050 Hb_005181_050--Hb_000844_050 Hb_005181_050--Hb_000809_250 Hb_000809_250--Hb_000844_050 Hb_000809_250--Hb_003124_270 Hb_000809_250--Hb_003680_020 Hb_001998_150 Hb_001998_150 Hb_000809_250--Hb_001998_150 Hb_003661_010 Hb_003661_010 Hb_000809_250--Hb_003661_010 Hb_001341_010--Hb_005181_050 Hb_001341_010--Hb_000167_120 Hb_000025_500 Hb_000025_500 Hb_001341_010--Hb_000025_500 Hb_000186_080 Hb_000186_080 Hb_001341_010--Hb_000186_080 Hb_003490_050 Hb_003490_050 Hb_001341_010--Hb_003490_050 Hb_001511_180--Hb_009476_120 Hb_033799_010 Hb_033799_010 Hb_001511_180--Hb_033799_010 Hb_002817_060 Hb_002817_060 Hb_001511_180--Hb_002817_060 Hb_005074_020 Hb_005074_020 Hb_001511_180--Hb_005074_020 Hb_000890_070 Hb_000890_070 Hb_001511_180--Hb_000890_070 Hb_000347_300 Hb_000347_300 Hb_001511_180--Hb_000347_300 Hb_004030_060 Hb_004030_060 Hb_000540_100--Hb_004030_060 Hb_002311_130 Hb_002311_130 Hb_000540_100--Hb_002311_130 Hb_001702_050 Hb_001702_050 Hb_000540_100--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000540_100--Hb_001235_130 Hb_001811_170 Hb_001811_170 Hb_000540_100--Hb_001811_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.393514 0.944386 0.589775 1.14635 0.243425 0.472368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.244423 0.121482 0.407403 1.16771 1.29851

CAGE analysis