Hb_001366_300

Information

Type -
Description -
Location Contig1366: 252645-253616
Sequence    

Annotation

kegg
ID pop:POPTR_0002s18570g
description POPTRDRAFT_644713; GERMIN-LIKE protein 10
nr
ID XP_002302696.1
description GERMIN-LIKE protein 10 [Populus trichocarpa]
swissprot
ID Q9M263
description Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1
trembl
ID A9PA01
description GERMIN-LIKE protein 10 OS=Populus trichocarpa GN=POPTR_0002s18570g PE=2 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 2 member 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10099: 252581-253601 , PASA_asmbl_10100: 253262-253561
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_300 0.0 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
2 Hb_077774_010 0.0773505973 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
3 Hb_007579_030 0.0786034717 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_026124_020 0.0889533508 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
5 Hb_001401_120 0.0900626482 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
6 Hb_148262_010 0.0941904713 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000983_130 0.096000392 - - transcription factor, putative [Ricinus communis]
8 Hb_000012_380 0.1015690508 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
9 Hb_029238_040 0.1016840717 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
10 Hb_000245_110 0.1037957733 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
11 Hb_000000_050 0.1040020183 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000000_260 0.1089042622 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
13 Hb_002835_070 0.1109831913 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001279_400 0.11315593 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
15 Hb_001680_050 0.1133362786 - - -
16 Hb_015934_090 0.11383592 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
17 Hb_011381_050 0.118397456 - - PREDICTED: protein GLUTAMINE DUMPER 5-like [Jatropha curcas]
18 Hb_009522_010 0.1185035449 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
19 Hb_001541_210 0.11966074 - - hypothetical protein POPTR_0008s19020g [Populus trichocarpa]
20 Hb_004102_200 0.1200932361 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_300 Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_001366_300--Hb_077774_010 Hb_007579_030 Hb_007579_030 Hb_001366_300--Hb_007579_030 Hb_026124_020 Hb_026124_020 Hb_001366_300--Hb_026124_020 Hb_001401_120 Hb_001401_120 Hb_001366_300--Hb_001401_120 Hb_148262_010 Hb_148262_010 Hb_001366_300--Hb_148262_010 Hb_000983_130 Hb_000983_130 Hb_001366_300--Hb_000983_130 Hb_003008_020 Hb_003008_020 Hb_077774_010--Hb_003008_020 Hb_077774_010--Hb_026124_020 Hb_001902_040 Hb_001902_040 Hb_077774_010--Hb_001902_040 Hb_005675_070 Hb_005675_070 Hb_077774_010--Hb_005675_070 Hb_009522_010 Hb_009522_010 Hb_077774_010--Hb_009522_010 Hb_001680_050 Hb_001680_050 Hb_007579_030--Hb_001680_050 Hb_007579_030--Hb_001401_120 Hb_029665_010 Hb_029665_010 Hb_007579_030--Hb_029665_010 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_000197_260 Hb_000197_260 Hb_007579_030--Hb_000197_260 Hb_026124_020--Hb_148262_010 Hb_000012_380 Hb_000012_380 Hb_026124_020--Hb_000012_380 Hb_026124_020--Hb_001401_120 Hb_000245_110 Hb_000245_110 Hb_026124_020--Hb_000245_110 Hb_001401_120--Hb_148262_010 Hb_009117_020 Hb_009117_020 Hb_001401_120--Hb_009117_020 Hb_001401_120--Hb_029238_040 Hb_148262_010--Hb_009117_020 Hb_148262_010--Hb_000012_380 Hb_148262_010--Hb_000245_110 Hb_148262_010--Hb_007579_030 Hb_004102_200 Hb_004102_200 Hb_000983_130--Hb_004102_200 Hb_004450_090 Hb_004450_090 Hb_000983_130--Hb_004450_090 Hb_000983_130--Hb_029238_040 Hb_002960_030 Hb_002960_030 Hb_000983_130--Hb_002960_030 Hb_152277_010 Hb_152277_010 Hb_000983_130--Hb_152277_010 Hb_000000_260 Hb_000000_260 Hb_000983_130--Hb_000000_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44182 245.723 148.87 902.128 2.84875 0.406928
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.87262 585.587

CAGE analysis