Hb_001366_350

Information

Type -
Description -
Location Contig1366: 290784-294110
Sequence    

Annotation

kegg
ID rcu:RCOM_1342590
description peptidyl-prolyl cis-trans isomerase, putative (EC:5.2.1.8)
nr
ID XP_012083039.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
swissprot
ID P34791
description Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1
trembl
ID A0A067JZZ7
description Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_14134 PE=3 SV=1
Gene Ontology
ID GO:0009535
description peptidyl-prolyl cis-trans isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10103: 290684-294100
cDNA
(Sanger)
(ID:Location)		 012_B14.ab1: 290722-293646 , 023_J01.ab1: 290722-293330 , 028_B16.ab1: 290689-293318 , 029_G20.ab1: 290716-292916

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_350 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
2 Hb_001519_170 0.1144912271 - - PREDICTED: K(+) efflux antiporter 3, chloroplastic [Jatropha curcas]
3 Hb_000146_030 0.1197082748 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
4 Hb_001711_060 0.1210602957 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
5 Hb_004007_170 0.1217777998 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_005488_160 0.1235657538 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
7 Hb_011114_020 0.1258374768 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
8 Hb_001047_180 0.1260033181 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002411_100 0.1268175352 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
10 Hb_015175_040 0.1296829402 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004117_150 0.1300296963 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
12 Hb_140360_010 0.1319434083 - - PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Populus euphratica]
13 Hb_000703_070 0.1336766432 - - PREDICTED: uncharacterized protein LOC105635704 isoform X1 [Jatropha curcas]
14 Hb_000000_180 0.1346486453 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
15 Hb_006583_030 0.1400631488 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X4 [Jatropha curcas]
16 Hb_000005_130 0.1400660034 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
17 Hb_000169_070 0.1408500075 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
18 Hb_002811_310 0.1427755206 - - hypothetical protein VITISV_025505 [Vitis vinifera]
19 Hb_001999_260 0.1485068741 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
20 Hb_004459_060 0.1487886377 - - 50S ribosomal protein L34, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001366_350 Hb_001366_350 Hb_001519_170 Hb_001519_170 Hb_001366_350--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_001366_350--Hb_000146_030 Hb_001711_060 Hb_001711_060 Hb_001366_350--Hb_001711_060 Hb_004007_170 Hb_004007_170 Hb_001366_350--Hb_004007_170 Hb_005488_160 Hb_005488_160 Hb_001366_350--Hb_005488_160 Hb_011114_020 Hb_011114_020 Hb_001366_350--Hb_011114_020 Hb_001519_170--Hb_001711_060 Hb_140360_010 Hb_140360_010 Hb_001519_170--Hb_140360_010 Hb_001519_170--Hb_000146_030 Hb_000000_180 Hb_000000_180 Hb_001519_170--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_001519_170--Hb_001386_090 Hb_001047_180 Hb_001047_180 Hb_000146_030--Hb_001047_180 Hb_004459_060 Hb_004459_060 Hb_000146_030--Hb_004459_060 Hb_002411_100 Hb_002411_100 Hb_000146_030--Hb_002411_100 Hb_000402_020 Hb_000402_020 Hb_000146_030--Hb_000402_020 Hb_000146_030--Hb_004007_170 Hb_000322_040 Hb_000322_040 Hb_000146_030--Hb_000322_040 Hb_001711_060--Hb_001386_090 Hb_003397_030 Hb_003397_030 Hb_001711_060--Hb_003397_030 Hb_012653_030 Hb_012653_030 Hb_001711_060--Hb_012653_030 Hb_001711_060--Hb_000146_030 Hb_000438_130 Hb_000438_130 Hb_001711_060--Hb_000438_130 Hb_003470_100 Hb_003470_100 Hb_004007_170--Hb_003470_100 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_004007_170--Hb_001047_180 Hb_004855_070 Hb_004855_070 Hb_004007_170--Hb_004855_070 Hb_005563_040 Hb_005563_040 Hb_005488_160--Hb_005563_040 Hb_005488_160--Hb_002411_100 Hb_007694_060 Hb_007694_060 Hb_005488_160--Hb_007694_060 Hb_015175_040 Hb_015175_040 Hb_005488_160--Hb_015175_040 Hb_010557_010 Hb_010557_010 Hb_005488_160--Hb_010557_010 Hb_000703_070 Hb_000703_070 Hb_005488_160--Hb_000703_070 Hb_000368_120 Hb_000368_120 Hb_011114_020--Hb_000368_120 Hb_011114_020--Hb_002411_100 Hb_000005_130 Hb_000005_130 Hb_011114_020--Hb_000005_130 Hb_000442_070 Hb_000442_070 Hb_011114_020--Hb_000442_070 Hb_006620_070 Hb_006620_070 Hb_011114_020--Hb_006620_070 Hb_011114_020--Hb_000146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.33743 11.2447 166.059 20.0012 7.33165 6.54169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1292 18.3737 10.4294 11.8817 111.489

CAGE analysis