Hb_001366_370

Information

Type -
Description -
Location Contig1366: 304312-308968
Sequence    

Annotation

kegg
ID rcu:RCOM_1342610
description Ubiquinone biosynthesis protein coq-8, putative
nr
ID XP_012083034.1
description PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
swissprot
ID A3QJU3
description AarF domain-containing protein kinase 4 OS=Danio rerio GN=adck4 PE=3 SV=2
trembl
ID A0A067JWL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14132 PE=4 SV=1
Gene Ontology
ID GO:0005746
description aarf domain-containing protein kinase 4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10107: 304312-305145 , PASA_asmbl_10108: 305188-309152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_370 0.0 - - PREDICTED: aarF domain-containing protein kinase 4 isoform X1 [Jatropha curcas]
2 Hb_000200_020 0.0645494196 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
3 Hb_002053_140 0.0683225454 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
4 Hb_000783_010 0.0690300185 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_001427_160 0.06918872 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_009787_030 0.0695728073 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
7 Hb_000510_300 0.072688887 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
8 Hb_011628_060 0.0737035822 - - Adenosine 3'-phospho 5'-phosphosulfate transporter, putative [Ricinus communis]
9 Hb_000141_080 0.0737155928 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
10 Hb_000720_040 0.0742882358 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
11 Hb_006153_070 0.0749526496 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
12 Hb_026198_070 0.0751803613 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
13 Hb_052805_010 0.0759761404 - - hypothetical protein POPTR_0009s03650g [Populus trichocarpa]
14 Hb_001318_280 0.0763376746 - - Protein FAM18B, putative [Ricinus communis]
15 Hb_008616_050 0.077455172 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
16 Hb_003994_230 0.0779869089 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
17 Hb_009898_050 0.0782340482 - - PREDICTED: beta-taxilin [Jatropha curcas]
18 Hb_000768_210 0.0784573792 - - PREDICTED: uncharacterized protein LOC105632522 [Jatropha curcas]
19 Hb_001189_070 0.0795714776 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
20 Hb_000381_120 0.0800544195 - - PREDICTED: uncharacterized protein LOC105648175 [Jatropha curcas]

Gene co-expression network

sample Hb_001366_370 Hb_001366_370 Hb_000200_020 Hb_000200_020 Hb_001366_370--Hb_000200_020 Hb_002053_140 Hb_002053_140 Hb_001366_370--Hb_002053_140 Hb_000783_010 Hb_000783_010 Hb_001366_370--Hb_000783_010 Hb_001427_160 Hb_001427_160 Hb_001366_370--Hb_001427_160 Hb_009787_030 Hb_009787_030 Hb_001366_370--Hb_009787_030 Hb_000510_300 Hb_000510_300 Hb_001366_370--Hb_000510_300 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_030736_020 Hb_030736_020 Hb_002053_140--Hb_030736_020 Hb_002053_140--Hb_001427_160 Hb_000141_080 Hb_000141_080 Hb_002053_140--Hb_000141_080 Hb_003929_270 Hb_003929_270 Hb_002053_140--Hb_003929_270 Hb_012796_020 Hb_012796_020 Hb_002053_140--Hb_012796_020 Hb_000783_010--Hb_000510_300 Hb_000720_040 Hb_000720_040 Hb_000783_010--Hb_000720_040 Hb_011628_060 Hb_011628_060 Hb_000783_010--Hb_011628_060 Hb_000331_180 Hb_000331_180 Hb_000783_010--Hb_000331_180 Hb_001427_160--Hb_009787_030 Hb_001427_160--Hb_000510_300 Hb_003994_230 Hb_003994_230 Hb_001427_160--Hb_003994_230 Hb_001703_060 Hb_001703_060 Hb_001427_160--Hb_001703_060 Hb_011344_120 Hb_011344_120 Hb_009787_030--Hb_011344_120 Hb_009787_030--Hb_000141_080 Hb_000115_150 Hb_000115_150 Hb_009787_030--Hb_000115_150 Hb_009787_030--Hb_002053_140 Hb_000510_300--Hb_001703_060 Hb_168978_010 Hb_168978_010 Hb_000510_300--Hb_168978_010 Hb_000510_300--Hb_000720_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.66679 1.98062 4.66522 7.24479 3.53332 4.95537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.86452 5.30653 4.24059 5.47914 3.52572

CAGE analysis