Hb_001366_380

Information

Type -
Description -
Location Contig1366: 310700-314802
Sequence    

Annotation

kegg
ID rcu:RCOM_1342620
description pectin acetylesterase, putative
nr
ID XP_012083033.1
description PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
swissprot
ID Q84JS1
description Pectin acetylesterase 6 OS=Arabidopsis thaliana GN=PAE6 PE=2 SV=1
trembl
ID A0A067K7W6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14131 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10109: 311619-314781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_380 0.0 - - PREDICTED: pectin acetylesterase 6-like isoform X2 [Jatropha curcas]
2 Hb_000272_010 0.0743351796 - - PREDICTED: DNA replication licensing factor MCM5 [Jatropha curcas]
3 Hb_000260_670 0.0873389932 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
4 Hb_006316_090 0.0897472248 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
5 Hb_005306_030 0.0960160764 - - PREDICTED: protein IQ-DOMAIN 1 [Jatropha curcas]
6 Hb_001649_050 0.1038330513 - - Shaggy-like kinase 13 isoform 1 [Theobroma cacao]
7 Hb_001076_010 0.1047372176 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
8 Hb_001369_550 0.1048299813 - - 21 kDa protein precursor, putative [Ricinus communis]
9 Hb_000103_460 0.1077463564 - - PREDICTED: calmodulin-like protein 11 [Jatropha curcas]
10 Hb_080147_070 0.1138901176 - - Rop5 [Hevea brasiliensis]
11 Hb_002081_190 0.1164793621 - - hypothetical protein EUGRSUZ_I010391, partial [Eucalyptus grandis]
12 Hb_000128_050 0.1217394372 - - conserved hypothetical protein [Ricinus communis]
13 Hb_173764_010 0.1224596517 - - protein binding protein, putative [Ricinus communis]
14 Hb_077562_020 0.1232146722 - - PREDICTED: 65-kDa microtubule-associated protein 5 [Jatropha curcas]
15 Hb_002874_010 0.1244668579 - - PREDICTED: replication protein A 32 kDa subunit A isoform X1 [Jatropha curcas]
16 Hb_004316_080 0.1250036447 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
17 Hb_008143_050 0.1276460036 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
18 Hb_000954_040 0.1279181389 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
19 Hb_000358_010 0.1298199522 - - PREDICTED: basic blue protein [Populus euphratica]
20 Hb_000343_220 0.1362679236 - - hypothetical protein CISIN_1g037489mg [Citrus sinensis]

Gene co-expression network

sample Hb_001366_380 Hb_001366_380 Hb_000272_010 Hb_000272_010 Hb_001366_380--Hb_000272_010 Hb_000260_670 Hb_000260_670 Hb_001366_380--Hb_000260_670 Hb_006316_090 Hb_006316_090 Hb_001366_380--Hb_006316_090 Hb_005306_030 Hb_005306_030 Hb_001366_380--Hb_005306_030 Hb_001649_050 Hb_001649_050 Hb_001366_380--Hb_001649_050 Hb_001076_010 Hb_001076_010 Hb_001366_380--Hb_001076_010 Hb_000272_010--Hb_000260_670 Hb_080147_070 Hb_080147_070 Hb_000272_010--Hb_080147_070 Hb_000535_040 Hb_000535_040 Hb_000272_010--Hb_000535_040 Hb_000343_220 Hb_000343_220 Hb_000272_010--Hb_000343_220 Hb_006711_040 Hb_006711_040 Hb_000272_010--Hb_006711_040 Hb_000260_670--Hb_080147_070 Hb_000954_040 Hb_000954_040 Hb_000260_670--Hb_000954_040 Hb_003360_010 Hb_003360_010 Hb_000260_670--Hb_003360_010 Hb_002700_030 Hb_002700_030 Hb_000260_670--Hb_002700_030 Hb_000358_010 Hb_000358_010 Hb_006316_090--Hb_000358_010 Hb_000103_460 Hb_000103_460 Hb_006316_090--Hb_000103_460 Hb_006316_090--Hb_001076_010 Hb_001369_550 Hb_001369_550 Hb_006316_090--Hb_001369_550 Hb_004316_080 Hb_004316_080 Hb_006316_090--Hb_004316_080 Hb_005306_030--Hb_001649_050 Hb_011849_030 Hb_011849_030 Hb_005306_030--Hb_011849_030 Hb_008143_050 Hb_008143_050 Hb_005306_030--Hb_008143_050 Hb_005306_030--Hb_000103_460 Hb_004607_020 Hb_004607_020 Hb_005306_030--Hb_004607_020 Hb_001649_050--Hb_011849_030 Hb_001649_050--Hb_004607_020 Hb_001649_050--Hb_004316_080 Hb_001649_050--Hb_000260_670 Hb_002874_010 Hb_002874_010 Hb_001076_010--Hb_002874_010 Hb_001076_010--Hb_000358_010 Hb_004631_040 Hb_004631_040 Hb_001076_010--Hb_004631_040 Hb_000030_080 Hb_000030_080 Hb_001076_010--Hb_000030_080 Hb_001076_010--Hb_000103_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0929175 0.842294 20.2785 8.51877 0.0257298 0.0132364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0475683 0.0447332 8.18043 1.04613

CAGE analysis