Hb_001369_010

Information

Type -
Description -
Location Contig1369: 9039-17273
Sequence    

Annotation

kegg
ID rcu:RCOM_1501160
description Nodulation receptor kinase precursor, putative
nr
ID XP_002510997.1
description Nodulation receptor kinase precursor, putative [Ricinus communis]
swissprot
ID P27061
description Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1
trembl
ID B9R9X2
description Nodulation receptor kinase, putative OS=Ricinus communis GN=RCOM_1501160 PE=4 SV=1
Gene Ontology
ID GO:0004714
description kinase-like protein tmkl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10118: 13648-17248 , PASA_asmbl_10119: 15727-15917
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_010 0.0 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
2 Hb_003462_040 0.0874079518 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
3 Hb_003226_250 0.0988250733 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
4 Hb_000808_150 0.1024980559 - - PREDICTED: uncharacterized protein LOC105647444 [Jatropha curcas]
5 Hb_001195_660 0.1098722292 - - metalloendopeptidase, putative [Ricinus communis]
6 Hb_006750_010 0.1134960637 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
7 Hb_000749_020 0.1136998504 - - Nucleotide-diphospho-sugar transferases superfamily protein isoform 1 [Theobroma cacao]
8 Hb_002759_220 0.1195058249 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
9 Hb_002817_040 0.1244672206 - - PREDICTED: kinesin-II 85 kDa subunit isoform X1 [Jatropha curcas]
10 Hb_000086_210 0.1264251488 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_019516_060 0.1275041576 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
12 Hb_000984_150 0.1277049131 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000820_110 0.1281798852 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
14 Hb_000139_300 0.1298336911 - - hypothetical protein POPTR_0008s19950g [Populus trichocarpa]
15 Hb_000649_040 0.1312292173 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
16 Hb_000077_310 0.1337009417 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
17 Hb_001677_040 0.1366287646 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
18 Hb_009079_050 0.1380117452 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
19 Hb_000140_060 0.139419632 - - 50S ribosomal protein L5, putative [Ricinus communis]
20 Hb_003935_070 0.1419075441 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_010 Hb_001369_010 Hb_003462_040 Hb_003462_040 Hb_001369_010--Hb_003462_040 Hb_003226_250 Hb_003226_250 Hb_001369_010--Hb_003226_250 Hb_000808_150 Hb_000808_150 Hb_001369_010--Hb_000808_150 Hb_001195_660 Hb_001195_660 Hb_001369_010--Hb_001195_660 Hb_006750_010 Hb_006750_010 Hb_001369_010--Hb_006750_010 Hb_000749_020 Hb_000749_020 Hb_001369_010--Hb_000749_020 Hb_003462_040--Hb_006750_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_019516_060 Hb_019516_060 Hb_003462_040--Hb_019516_060 Hb_003462_040--Hb_003226_250 Hb_003462_040--Hb_001195_660 Hb_003226_250--Hb_000808_150 Hb_011310_040 Hb_011310_040 Hb_003226_250--Hb_011310_040 Hb_002759_220 Hb_002759_220 Hb_003226_250--Hb_002759_220 Hb_002596_080 Hb_002596_080 Hb_003226_250--Hb_002596_080 Hb_000077_310 Hb_000077_310 Hb_000808_150--Hb_000077_310 Hb_000139_300 Hb_000139_300 Hb_000808_150--Hb_000139_300 Hb_000808_150--Hb_000749_020 Hb_000327_360 Hb_000327_360 Hb_000808_150--Hb_000327_360 Hb_161396_010 Hb_161396_010 Hb_000808_150--Hb_161396_010 Hb_003847_040 Hb_003847_040 Hb_001195_660--Hb_003847_040 Hb_026549_070 Hb_026549_070 Hb_001195_660--Hb_026549_070 Hb_000283_140 Hb_000283_140 Hb_001195_660--Hb_000283_140 Hb_009079_050 Hb_009079_050 Hb_001195_660--Hb_009079_050 Hb_003582_090 Hb_003582_090 Hb_001195_660--Hb_003582_090 Hb_001195_660--Hb_000139_300 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_006750_010--Hb_019516_060 Hb_002817_040 Hb_002817_040 Hb_000749_020--Hb_002817_040 Hb_000086_210 Hb_000086_210 Hb_000749_020--Hb_000086_210 Hb_002759_120 Hb_002759_120 Hb_000749_020--Hb_002759_120 Hb_005074_040 Hb_005074_040 Hb_000749_020--Hb_005074_040 Hb_007904_060 Hb_007904_060 Hb_000749_020--Hb_007904_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28307 5.85291 19.0923 39.6026 2.17859 1.44143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4379 3.53999 3.87072 3.10763 32.1148

CAGE analysis