Hb_001369_050

Information

Type -
Description -
Location Contig1369: 45276-46219
Sequence    

Annotation

kegg
ID -
description -
nr
ID EYU20194.1
description hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
swissprot
ID -
description -
trembl
ID A0A022Q0Z8
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a0083172mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description uncharacterized rho gtpase-activating protein at5g61530

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10135: 45322-50021 , PASA_asmbl_10136: 45747-45877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_050 0.0 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
2 Hb_084849_020 0.05289521 - - ARF GTPase activator, putative [Ricinus communis]
3 Hb_005686_110 0.0679115124 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
4 Hb_001235_070 0.0769592022 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001718_100 0.0785776143 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
6 Hb_092100_020 0.0838600013 - - strictosidine synthase, putative [Ricinus communis]
7 Hb_003050_230 0.0859262165 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001243_050 0.0862644862 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
9 Hb_000333_090 0.0872898262 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
10 Hb_001427_120 0.0901502043 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
11 Hb_100777_010 0.0914786551 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
12 Hb_004899_320 0.091674735 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
13 Hb_000362_210 0.0928256964 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
14 Hb_002025_320 0.0940177501 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
15 Hb_000371_080 0.0946060634 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_021650_030 0.0968406466 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
17 Hb_002411_200 0.096918496 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002078_450 0.0977988277 - - nuclear transport factor, putative [Ricinus communis]
19 Hb_000086_570 0.098008376 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
20 Hb_071736_020 0.0986608973 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]

Gene co-expression network

sample Hb_001369_050 Hb_001369_050 Hb_084849_020 Hb_084849_020 Hb_001369_050--Hb_084849_020 Hb_005686_110 Hb_005686_110 Hb_001369_050--Hb_005686_110 Hb_001235_070 Hb_001235_070 Hb_001369_050--Hb_001235_070 Hb_001718_100 Hb_001718_100 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_003050_230 Hb_003050_230 Hb_001369_050--Hb_003050_230 Hb_084849_020--Hb_001718_100 Hb_084849_020--Hb_005686_110 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210 Hb_000371_080 Hb_000371_080 Hb_005686_110--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_005686_110--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_005686_110--Hb_022250_040 Hb_005686_110--Hb_001235_070 Hb_009711_030 Hb_009711_030 Hb_005686_110--Hb_009711_030 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_001718_100--Hb_001427_120 Hb_071736_020 Hb_071736_020 Hb_001718_100--Hb_071736_020 Hb_001718_100--Hb_002078_450 Hb_000086_570 Hb_000086_570 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_023226_090 Hb_023226_090 Hb_092100_020--Hb_023226_090 Hb_157022_020 Hb_157022_020 Hb_092100_020--Hb_157022_020 Hb_092100_020--Hb_084849_020 Hb_092100_020--Hb_003050_230 Hb_117134_010 Hb_117134_010 Hb_092100_020--Hb_117134_010 Hb_003050_230--Hb_005686_110 Hb_001437_220 Hb_001437_220 Hb_003050_230--Hb_001437_220 Hb_000061_330 Hb_000061_330 Hb_003050_230--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.605 15.9823 7.2517 15.89 37.6144 86.2199
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.949 80.2236 69.268 16.7454 14.3783

CAGE analysis