Hb_001369_070

Information

Type -
Description -
Location Contig1369: 51895-62983
Sequence    

Annotation

kegg
ID pop:POPTR_0004s24170g
description hypothetical protein
nr
ID CBI17743.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q07423
description Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1
trembl
ID A0A0D9W5P8
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0016021
description hexose carrier protein hex6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10138: 52750-53269 , PASA_asmbl_10140: 61396-62439 , PASA_asmbl_10141: 62582-63040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_007894_030 0.0675753643 - - calcium-dependent protein kinase, putative [Ricinus communis]
3 Hb_046101_010 0.0714069189 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Jatropha curcas]
4 Hb_000497_100 0.0734191293 - - respiratory burst oxidase D [Manihot esculenta]
5 Hb_020285_010 0.0739239452 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3, partial [Pyrus x bretschneideri]
6 Hb_074312_020 0.0886459221 - - cytochrome P450, putative [Ricinus communis]
7 Hb_038777_010 0.0912449224 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]
8 Hb_002276_100 0.0949504584 - - PREDICTED: UDP-glycosyltransferase 89A2-like [Jatropha curcas]
9 Hb_000085_220 0.1031809887 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000028_460 0.104905703 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
11 Hb_007420_020 0.1055571319 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_005357_020 0.1070300955 - - conserved hypothetical protein [Ricinus communis]
13 Hb_010417_100 0.1079386685 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
14 Hb_009803_030 0.1088968942 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
15 Hb_167272_010 0.1090480005 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
16 Hb_000280_110 0.1098414905 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_014361_020 0.1127323486 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
18 Hb_114310_050 0.1128043033 - - Iron(III)-zinc(II) purple acid phosphatase precursor family protein [Populus trichocarpa]
19 Hb_001636_010 0.1153568305 - - hypothetical protein JCGZ_01264 [Jatropha curcas]
20 Hb_002600_010 0.1162834379 - - Allene oxide cyclase 4, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001369_070 Hb_001369_070 Hb_007894_030 Hb_007894_030 Hb_001369_070--Hb_007894_030 Hb_046101_010 Hb_046101_010 Hb_001369_070--Hb_046101_010 Hb_000497_100 Hb_000497_100 Hb_001369_070--Hb_000497_100 Hb_020285_010 Hb_020285_010 Hb_001369_070--Hb_020285_010 Hb_074312_020 Hb_074312_020 Hb_001369_070--Hb_074312_020 Hb_038777_010 Hb_038777_010 Hb_001369_070--Hb_038777_010 Hb_007894_030--Hb_020285_010 Hb_007894_030--Hb_000497_100 Hb_010417_100 Hb_010417_100 Hb_007894_030--Hb_010417_100 Hb_007894_030--Hb_038777_010 Hb_001636_010 Hb_001636_010 Hb_007894_030--Hb_001636_010 Hb_046101_010--Hb_020285_010 Hb_046101_010--Hb_074312_020 Hb_002276_100 Hb_002276_100 Hb_046101_010--Hb_002276_100 Hb_001894_040 Hb_001894_040 Hb_046101_010--Hb_001894_040 Hb_000280_110 Hb_000280_110 Hb_046101_010--Hb_000280_110 Hb_000497_100--Hb_020285_010 Hb_000028_460 Hb_000028_460 Hb_000497_100--Hb_000028_460 Hb_000497_100--Hb_038777_010 Hb_131662_010 Hb_131662_010 Hb_000497_100--Hb_131662_010 Hb_020285_010--Hb_038777_010 Hb_020285_010--Hb_002276_100 Hb_003439_020 Hb_003439_020 Hb_074312_020--Hb_003439_020 Hb_001862_060 Hb_001862_060 Hb_074312_020--Hb_001862_060 Hb_074312_020--Hb_002276_100 Hb_134017_010 Hb_134017_010 Hb_074312_020--Hb_134017_010 Hb_005357_020 Hb_005357_020 Hb_038777_010--Hb_005357_020 Hb_038777_010--Hb_001862_060 Hb_038777_010--Hb_000028_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.39947 1.0646 1.67837 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0144445 0 0.0217451 2.41642 1.13993

CAGE analysis