Hb_001369_170

Information

Type -
Description -
Location Contig1369: 149321-151217
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05640g
description 60S ribosomal protein L15
nr
ID XP_012466674.1
description PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
swissprot
ID O82528
description 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1
trembl
ID A0A0D2PUM3
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G049600 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10148: 149048-150953
cDNA
(Sanger)
(ID:Location)		 013_M03.ab1: 149048-150901 , 014_C23.ab1: 149049-150687 , 047_H12.ab1: 149048-150894

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_170 0.0 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
2 Hb_001085_270 0.059914411 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
3 Hb_000788_010 0.0606855078 - - 40S ribosomal protein S16A [Hevea brasiliensis]
4 Hb_000302_280 0.0799284354 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
5 Hb_000567_410 0.0879675579 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
6 Hb_004543_040 0.0903273768 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_006478_150 0.0932112007 - - mitochondrial ribosomal protein L24, putative [Ricinus communis]
8 Hb_000735_090 0.0943991134 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
9 Hb_086639_090 0.0952000466 - - 60S ribosomal protein L7a, putative [Ricinus communis]
10 Hb_006478_160 0.096139503 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
11 Hb_180074_010 0.0977144906 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
12 Hb_006006_050 0.098966674 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
13 Hb_002909_130 0.1011922925 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_033642_080 0.1025177501 - - V-type proton ATPase subunit E [Hevea brasiliensis]
15 Hb_007120_090 0.1026770266 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
16 Hb_000576_060 0.1048230596 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
17 Hb_008921_020 0.1059564415 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
18 Hb_000997_120 0.1061734744 - - 40S ribosomal protein S15E [Hevea brasiliensis]
19 Hb_012395_130 0.1061746538 - - Os02g0814700 [Oryza sativa Japonica Group]
20 Hb_172221_010 0.1064093685 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_170 Hb_001369_170 Hb_001085_270 Hb_001085_270 Hb_001369_170--Hb_001085_270 Hb_000788_010 Hb_000788_010 Hb_001369_170--Hb_000788_010 Hb_000302_280 Hb_000302_280 Hb_001369_170--Hb_000302_280 Hb_000567_410 Hb_000567_410 Hb_001369_170--Hb_000567_410 Hb_004543_040 Hb_004543_040 Hb_001369_170--Hb_004543_040 Hb_006478_150 Hb_006478_150 Hb_001369_170--Hb_006478_150 Hb_001085_270--Hb_000567_410 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_000193_120 Hb_000193_120 Hb_001085_270--Hb_000193_120 Hb_006478_160 Hb_006478_160 Hb_000788_010--Hb_006478_160 Hb_000576_060 Hb_000576_060 Hb_000788_010--Hb_000576_060 Hb_000788_010--Hb_000567_410 Hb_000788_010--Hb_001085_270 Hb_002811_080 Hb_002811_080 Hb_000788_010--Hb_002811_080 Hb_072922_020 Hb_072922_020 Hb_000302_280--Hb_072922_020 Hb_005463_140 Hb_005463_140 Hb_000302_280--Hb_005463_140 Hb_000384_120 Hb_000384_120 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000707_020 Hb_000707_020 Hb_000302_280--Hb_000707_020 Hb_000567_410--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000997_120 Hb_000997_120 Hb_004543_040--Hb_000997_120 Hb_086639_090 Hb_086639_090 Hb_004543_040--Hb_086639_090 Hb_091433_020 Hb_091433_020 Hb_004543_040--Hb_091433_020 Hb_000496_120 Hb_000496_120 Hb_004543_040--Hb_000496_120 Hb_004543_040--Hb_006478_150 Hb_004567_120 Hb_004567_120 Hb_006478_150--Hb_004567_120 Hb_004216_050 Hb_004216_050 Hb_006478_150--Hb_004216_050 Hb_033642_080 Hb_033642_080 Hb_006478_150--Hb_033642_080 Hb_006478_150--Hb_091433_020 Hb_000417_360 Hb_000417_360 Hb_006478_150--Hb_000417_360 Hb_000441_110 Hb_000441_110 Hb_006478_150--Hb_000441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1556 25.9984 36.4955 56.608 34.1017 44.2123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.533 272.731 90.3576 93.5295 41.9242

CAGE analysis