Hb_001369_180

Information

Type -
Description -
Location Contig1369: 152998-160150
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00830g
description hypothetical protein
nr
ID XP_012090462.1
description PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
swissprot
ID Q54IV7
description Protein RFT1 homolog OS=Dictyostelium discoideum GN=rft1 PE=3 SV=1
trembl
ID A0A067JEV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26272 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein rft1 homolog isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10149: 153002-153586 , PASA_asmbl_10150: 155909-159964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_180 0.0 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
2 Hb_003030_070 0.0462592159 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
3 Hb_007218_080 0.0578598983 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
4 Hb_000230_560 0.0630005746 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
5 Hb_002495_040 0.0636903019 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
6 Hb_007336_020 0.0643304347 - - Mannose-P-dolichol utilization defect 1 protein, putative [Ricinus communis]
7 Hb_004310_130 0.0660364591 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_006620_020 0.0664647588 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
9 Hb_000645_050 0.0686561042 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
10 Hb_000538_100 0.0691507568 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003125_160 0.0695520784 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
12 Hb_000853_230 0.0711611435 - - syntaxin, putative [Ricinus communis]
13 Hb_150360_030 0.0720449107 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
14 Hb_000879_200 0.0722083145 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
15 Hb_007594_130 0.0738389708 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_003665_060 0.0742064188 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
17 Hb_031939_010 0.0745829745 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
18 Hb_000498_010 0.0750473482 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_007317_110 0.0752124558 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
20 Hb_000630_050 0.075793091 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001369_180 Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_001369_180--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_001369_180--Hb_007218_080 Hb_000230_560 Hb_000230_560 Hb_001369_180--Hb_000230_560 Hb_002495_040 Hb_002495_040 Hb_001369_180--Hb_002495_040 Hb_007336_020 Hb_007336_020 Hb_001369_180--Hb_007336_020 Hb_004310_130 Hb_004310_130 Hb_001369_180--Hb_004310_130 Hb_003665_060 Hb_003665_060 Hb_003030_070--Hb_003665_060 Hb_003030_070--Hb_000230_560 Hb_003030_070--Hb_002495_040 Hb_007317_110 Hb_007317_110 Hb_003030_070--Hb_007317_110 Hb_002391_300 Hb_002391_300 Hb_003030_070--Hb_002391_300 Hb_007218_080--Hb_004310_130 Hb_150360_030 Hb_150360_030 Hb_007218_080--Hb_150360_030 Hb_003406_010 Hb_003406_010 Hb_007218_080--Hb_003406_010 Hb_007218_080--Hb_002391_300 Hb_007218_080--Hb_003030_070 Hb_002997_080 Hb_002997_080 Hb_000230_560--Hb_002997_080 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_000883_020 Hb_000883_020 Hb_000230_560--Hb_000883_020 Hb_000465_430 Hb_000465_430 Hb_002495_040--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_000092_100 Hb_000092_100 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_007590_080 Hb_007590_080 Hb_007336_020--Hb_007590_080 Hb_002475_160 Hb_002475_160 Hb_007336_020--Hb_002475_160 Hb_000322_100 Hb_000322_100 Hb_007336_020--Hb_000322_100 Hb_011942_080 Hb_011942_080 Hb_007336_020--Hb_011942_080 Hb_008253_010 Hb_008253_010 Hb_007336_020--Hb_008253_010 Hb_004310_130--Hb_150360_030 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.8076 5.46368 6.8596 7.06135 12.4823 14.5121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7618 8.49025 7.02555 5.89484 5.36727

CAGE analysis