Hb_001369_190

Information

Type -
Description -
Location Contig1369: 192603-197255
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00820g
description hypothetical protein
nr
ID XP_012090461.1
description PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
swissprot
ID Q9FII5
description Leucine-rich repeat receptor-like protein kinase TDR OS=Arabidopsis thaliana GN=TDR PE=1 SV=1
trembl
ID A0A067JR02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26271 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like protein kinase tdr

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10151: 193057-197271
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_190 0.0 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
2 Hb_004558_060 0.0777663077 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
3 Hb_006088_020 0.0936483239 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_002918_270 0.0963688851 - - PREDICTED: protein E6-like [Populus euphratica]
5 Hb_003607_080 0.1015011179 - - PREDICTED: putative kinase-like protein TMKL1 [Jatropha curcas]
6 Hb_005215_050 0.1019643147 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
7 Hb_000849_030 0.1054608919 - - PREDICTED: fimbrin-2 [Jatropha curcas]
8 Hb_006586_040 0.1139325499 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
9 Hb_000922_050 0.1140065946 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
10 Hb_009736_020 0.1140471391 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
11 Hb_001675_290 0.1151273242 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
12 Hb_005648_020 0.1177574882 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
13 Hb_000011_260 0.120665768 - - conserved hypothetical protein [Ricinus communis]
14 Hb_035995_010 0.1216640225 - - -
15 Hb_000327_320 0.1243869606 - - PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]
16 Hb_107658_010 0.1256888291 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
17 Hb_001418_050 0.1266646452 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
18 Hb_003466_010 0.1267060312 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
19 Hb_008021_050 0.1284930229 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001408_080 0.1296005987 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_190 Hb_001369_190 Hb_004558_060 Hb_004558_060 Hb_001369_190--Hb_004558_060 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_001369_190--Hb_002918_270 Hb_003607_080 Hb_003607_080 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_000849_030 Hb_000849_030 Hb_001369_190--Hb_000849_030 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_002171_020 Hb_002171_020 Hb_004558_060--Hb_002171_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_002518_020 Hb_002518_020 Hb_004558_060--Hb_002518_020 Hb_004558_060--Hb_002918_270 Hb_006088_020--Hb_002918_270 Hb_000003_610 Hb_000003_610 Hb_006088_020--Hb_000003_610 Hb_000997_080 Hb_000997_080 Hb_006088_020--Hb_000997_080 Hb_001789_230 Hb_001789_230 Hb_006088_020--Hb_001789_230 Hb_000011_280 Hb_000011_280 Hb_006088_020--Hb_000011_280 Hb_050898_030 Hb_050898_030 Hb_002918_270--Hb_050898_030 Hb_002918_270--Hb_001789_230 Hb_002918_270--Hb_005648_020 Hb_015292_020 Hb_015292_020 Hb_002918_270--Hb_015292_020 Hb_003466_010 Hb_003466_010 Hb_002918_270--Hb_003466_010 Hb_012132_050 Hb_012132_050 Hb_002918_270--Hb_012132_050 Hb_008021_050 Hb_008021_050 Hb_003607_080--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_003607_080--Hb_000093_010 Hb_003607_080--Hb_005648_020 Hb_003607_080--Hb_005215_050 Hb_170077_020 Hb_170077_020 Hb_003607_080--Hb_170077_020 Hb_003607_080--Hb_003466_010 Hb_005215_050--Hb_005648_020 Hb_002384_030 Hb_002384_030 Hb_005215_050--Hb_002384_030 Hb_005215_050--Hb_004558_060 Hb_005215_050--Hb_008021_050 Hb_001408_080 Hb_001408_080 Hb_000849_030--Hb_001408_080 Hb_000849_030--Hb_003466_010 Hb_036520_030 Hb_036520_030 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_001427_100 Hb_001427_100 Hb_000849_030--Hb_001427_100 Hb_103225_030 Hb_103225_030 Hb_000849_030--Hb_103225_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.753253 4.55448 7.2968 25.8526 0.266715 0.204937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0698739 0.0183293 0 1.52502 5.02281

CAGE analysis