Hb_001369_250

Information

Type -
Description -
Location Contig1369: 259402-265577
Sequence    

Annotation

kegg
ID rcu:RCOM_1500680
description hypothetical protein
nr
ID XP_012087717.1
description PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
swissprot
ID Q8U4K7
description 2-phosphoglycerate kinase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=pgk2 PE=3 SV=1
trembl
ID A0A067JXE7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26448 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_250 0.0 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
2 Hb_002675_140 0.086024971 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
3 Hb_010174_150 0.0902991907 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_000555_100 0.0954221784 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
5 Hb_010560_050 0.095861472 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
6 Hb_002357_060 0.0969656755 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
7 Hb_000665_050 0.0972095237 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
8 Hb_001301_110 0.0982342623 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
9 Hb_006538_090 0.0983051941 - - PREDICTED: IST1 homolog [Jatropha curcas]
10 Hb_004429_090 0.0988757588 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
11 Hb_003038_140 0.0995405711 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
12 Hb_168893_020 0.0998304774 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
13 Hb_004734_040 0.1018756967 - - eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis]
14 Hb_000167_010 0.1021127139 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000210_120 0.1043955925 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
16 Hb_003058_120 0.1060192819 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
17 Hb_000665_140 0.1063753667 - - PREDICTED: protein MEMO1 [Jatropha curcas]
18 Hb_008103_050 0.1087699058 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
19 Hb_000034_070 0.1100794004 - - PREDICTED: DNA (cytosine-5)-methyltransferase 3B-like [Jatropha curcas]
20 Hb_023001_040 0.110387983 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001369_250 Hb_001369_250 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_000034_070 Hb_000034_070 Hb_002675_140--Hb_000034_070 Hb_001085_240 Hb_001085_240 Hb_002675_140--Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050 Hb_010174_150--Hb_002357_060 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_000227_070 Hb_000227_070 Hb_010174_150--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_010174_150--Hb_000012_410 Hb_000210_120 Hb_000210_120 Hb_010174_150--Hb_000210_120 Hb_005588_060 Hb_005588_060 Hb_000555_100--Hb_005588_060 Hb_168893_020 Hb_168893_020 Hb_000555_100--Hb_168893_020 Hb_007257_060 Hb_007257_060 Hb_000555_100--Hb_007257_060 Hb_000167_010 Hb_000167_010 Hb_000555_100--Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000555_100--Hb_003058_120 Hb_002631_010 Hb_002631_010 Hb_010560_050--Hb_002631_010 Hb_000025_190 Hb_000025_190 Hb_010560_050--Hb_000025_190 Hb_000700_040 Hb_000700_040 Hb_010560_050--Hb_000700_040 Hb_010560_050--Hb_003633_050 Hb_010560_050--Hb_001085_240 Hb_000286_060 Hb_000286_060 Hb_010560_050--Hb_000286_060 Hb_005648_010 Hb_005648_010 Hb_002357_060--Hb_005648_010 Hb_000367_090 Hb_000367_090 Hb_002357_060--Hb_000367_090 Hb_023001_040 Hb_023001_040 Hb_002357_060--Hb_023001_040 Hb_004880_150 Hb_004880_150 Hb_002357_060--Hb_004880_150 Hb_000179_270 Hb_000179_270 Hb_002357_060--Hb_000179_270 Hb_002357_060--Hb_000167_010 Hb_005306_180 Hb_005306_180 Hb_000665_050--Hb_005306_180 Hb_001218_030 Hb_001218_030 Hb_000665_050--Hb_001218_030 Hb_000414_130 Hb_000414_130 Hb_000665_050--Hb_000414_130 Hb_001301_110 Hb_001301_110 Hb_000665_050--Hb_001301_110 Hb_000460_030 Hb_000460_030 Hb_000665_050--Hb_000460_030 Hb_000853_150 Hb_000853_150 Hb_000665_050--Hb_000853_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.95188 1.99803 2.56848 5.29548 1.14223 1.70294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13861 4.25588 2.23287 5.86135 2.69188

CAGE analysis