Hb_001369_300

Information

Type -
Description -
Location Contig1369: 286358-294667
Sequence    

Annotation

kegg
ID rcu:RCOM_1500520
description Structural maintenance of chromosome, putative
nr
ID XP_012090453.1
description PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
swissprot
ID Q9C5Y4
description Structural maintenance of chromosomes protein 2-1 OS=Arabidopsis thaliana GN=SMC2-1 PE=2 SV=2
trembl
ID B9R9T8
description Structural maintenance of chromosomes protein OS=Ricinus communis GN=RCOM_1500520 PE=3 SV=1
Gene Ontology
ID GO:0000796
description structural maintenance of chromosomes protein 2-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10165: 294143-294260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_300 0.0 - - PREDICTED: structural maintenance of chromosomes protein 2-1-like [Jatropha curcas]
2 Hb_001660_100 0.0782072934 - - PREDICTED: glyoxylate reductase/hydroxypyruvate reductase [Jatropha curcas]
3 Hb_001357_310 0.08282966 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
4 Hb_000510_340 0.0903803288 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
5 Hb_000402_150 0.0908082196 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
6 Hb_005271_040 0.0910865054 - - PREDICTED: serine racemase [Jatropha curcas]
7 Hb_000875_080 0.09139835 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
8 Hb_002439_010 0.0934705431 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
9 Hb_007257_060 0.0943475552 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
10 Hb_008114_040 0.0947436607 - - Fanconi anemia group D2 [Gossypium arboreum]
11 Hb_001025_090 0.0969771392 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
12 Hb_002400_340 0.0999421123 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
13 Hb_006588_060 0.100494211 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
14 Hb_002272_050 0.1008775203 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
15 Hb_164390_010 0.1012878896 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
16 Hb_000077_320 0.1015201021 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
17 Hb_002445_100 0.1017542155 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
18 Hb_111036_010 0.1018520882 - - Eukaryotic translation initiation factor 6-2 [Glycine soja]
19 Hb_163175_010 0.1028814613 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
20 Hb_029388_010 0.1034483134 transcription factor TF Family: C2C2-CO-like PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_001369_300 Hb_001369_300 Hb_001660_100 Hb_001660_100 Hb_001369_300--Hb_001660_100 Hb_001357_310 Hb_001357_310 Hb_001369_300--Hb_001357_310 Hb_000510_340 Hb_000510_340 Hb_001369_300--Hb_000510_340 Hb_000402_150 Hb_000402_150 Hb_001369_300--Hb_000402_150 Hb_005271_040 Hb_005271_040 Hb_001369_300--Hb_005271_040 Hb_000875_080 Hb_000875_080 Hb_001369_300--Hb_000875_080 Hb_000260_470 Hb_000260_470 Hb_001660_100--Hb_000260_470 Hb_001660_100--Hb_005271_040 Hb_000853_150 Hb_000853_150 Hb_001660_100--Hb_000853_150 Hb_000663_060 Hb_000663_060 Hb_001660_100--Hb_000663_060 Hb_001828_180 Hb_001828_180 Hb_001660_100--Hb_001828_180 Hb_010775_030 Hb_010775_030 Hb_001357_310--Hb_010775_030 Hb_007257_060 Hb_007257_060 Hb_001357_310--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_001357_310--Hb_002014_010 Hb_012092_050 Hb_012092_050 Hb_001357_310--Hb_012092_050 Hb_001357_310--Hb_000402_150 Hb_006588_060 Hb_006588_060 Hb_001357_310--Hb_006588_060 Hb_011224_160 Hb_011224_160 Hb_000510_340--Hb_011224_160 Hb_002439_010 Hb_002439_010 Hb_000510_340--Hb_002439_010 Hb_000510_340--Hb_001828_180 Hb_003528_050 Hb_003528_050 Hb_000510_340--Hb_003528_050 Hb_011671_270 Hb_011671_270 Hb_000510_340--Hb_011671_270 Hb_000979_220 Hb_000979_220 Hb_000510_340--Hb_000979_220 Hb_008114_040 Hb_008114_040 Hb_000402_150--Hb_008114_040 Hb_000684_510 Hb_000684_510 Hb_000402_150--Hb_000684_510 Hb_001878_050 Hb_001878_050 Hb_000402_150--Hb_001878_050 Hb_000402_150--Hb_012092_050 Hb_000402_150--Hb_006588_060 Hb_005271_040--Hb_000260_470 Hb_005271_040--Hb_000875_080 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_005271_040--Hb_000663_060 Hb_002272_050 Hb_002272_050 Hb_005271_040--Hb_002272_050 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.682815 0.71166 1.55541 0.868252 0.605093 0.579623
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.76457 1.0303 0.601785 1.55048 0.54779

CAGE analysis